Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   SD440_RS05725 Genome accession   NZ_CP139561
Coordinates   1113747..1114325 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain NCCP     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1108747..1119325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS05705 - 1109241..1110536 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  SD440_RS05710 - 1110628..1112160 (-) 1533 WP_345912189.1 FAD-dependent oxidoreductase -
  SD440_RS05715 - 1112302..1113162 (+) 861 WP_345912190.1 SDR family oxidoreductase -
  SD440_RS05720 - 1113221..1113457 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  SD440_RS05725 comK 1113747..1114325 (+) 579 WP_017366958.1 competence protein ComK Regulator
  SD440_RS05730 - 1114469..1115575 (+) 1107 WP_345912191.1 alanine racemase -
  SD440_RS05735 - 1115877..1116359 (+) 483 WP_046343108.1 hypothetical protein -
  SD440_RS05740 - 1116390..1117829 (-) 1440 WP_345912192.1 PLP-dependent aminotransferase family protein -
  SD440_RS05745 - 1117973..1119142 (+) 1170 WP_046526638.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=910131 SD440_RS05725 WP_017366958.1 1113747..1114325(+) (comK) [Bacillus altitudinis strain NCCP]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=910131 SD440_RS05725 WP_017366958.1 1113747..1114325(+) (comK) [Bacillus altitudinis strain NCCP]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGTA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATACGAAGTAACAGGAATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTTCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615