Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SD440_RS00255 Genome accession   NZ_CP139561
Coordinates   47304..47594 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42304..52594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS00215 - 42337..42666 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  SD440_RS00220 - 42679..43119 (+) 441 WP_035391564.1 YaaR family protein -
  SD440_RS00225 holB 43131..44120 (+) 990 WP_345911663.1 DNA polymerase III subunit delta' -
  SD440_RS00230 - 44123..44950 (+) 828 WP_007496230.1 stage 0 sporulation family protein -
  SD440_RS00235 yabA 44965..45318 (+) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  SD440_RS00240 - 45374..46117 (+) 744 WP_039962495.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SD440_RS00245 - 46104..46403 (+) 300 WP_019744059.1 GIY-YIG nuclease family protein -
  SD440_RS00250 rsmI 46378..47259 (+) 882 WP_008341890.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SD440_RS00255 abrB 47304..47594 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SD440_RS00260 metG 48114..50114 (+) 2001 WP_322536154.1 methionine--tRNA ligase -
  SD440_RS00265 - 50196..50963 (+) 768 WP_217816660.1 TatD family hydrolase -
  SD440_RS00270 - 51208..52410 (+) 1203 WP_322536155.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=910122 SD440_RS00255 WP_087975202.1 47304..47594(-) (abrB) [Bacillus altitudinis strain NCCP]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=910122 SD440_RS00255 WP_087975202.1 47304..47594(-) (abrB) [Bacillus altitudinis strain NCCP]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938