Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SD440_RS00020 Genome accession   NZ_CP139561
Coordinates   3153..4265 (+) Length   370 a.a.
NCBI ID   WP_331833000.1    Uniprot ID   -
Organism   Bacillus altitudinis strain NCCP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD440_RS00005 dnaA 97..1437 (+) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  SD440_RS00010 dnaN 1634..2770 (+) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  SD440_RS00015 yaaA 2921..3136 (+) 216 WP_331832999.1 S4 domain-containing protein YaaA -
  SD440_RS00020 recF 3153..4265 (+) 1113 WP_331833000.1 DNA replication/repair protein RecF Machinery gene
  SD440_RS00025 - 4283..4528 (+) 246 WP_008360920.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  SD440_RS00030 gyrB 4586..6502 (+) 1917 WP_025206585.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  SD440_RS00035 gyrA 6736..9231 (+) 2496 WP_046342400.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42600.68 Da        Isoelectric Point: 7.0883

>NTDB_id=910120 SD440_RS00020 WP_331833000.1 3153..4265(+) (recF) [Bacillus altitudinis strain NCCP]
MYIQSLALTSYRNYEYTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=910120 SD440_RS00020 WP_331833000.1 3153..4265(+) (recF) [Bacillus altitudinis strain NCCP]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAATACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTTGTCACCACTACGAGTGT
TGAAGGCATCGACCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

82.927

99.73

0.827