Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SNE23_RS21745 Genome accession   NZ_CP139483
Coordinates   4189235..4189981 (-) Length   248 a.a.
NCBI ID   WP_000487010.1    Uniprot ID   Q81LT9
Organism   Bacillus sp. RA(2023)     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4184235..4194981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS21730 (SNE23_21730) dnaG 4185002..4186798 (-) 1797 WP_000528216.1 DNA primase -
  SNE23_RS21735 (SNE23_21735) - 4187653..4188465 (-) 813 WP_000368943.1 pyruvate, water dikinase regulatory protein -
  SNE23_RS21740 (SNE23_21740) - 4188495..4189127 (-) 633 WP_000583758.1 helix-turn-helix transcriptional regulator -
  SNE23_RS21745 (SNE23_21745) recO 4189235..4189981 (-) 747 WP_000487010.1 DNA repair protein RecO Machinery gene
  SNE23_RS21750 (SNE23_21750) - 4190015..4190158 (-) 144 WP_000883924.1 YqzL family protein -
  SNE23_RS21755 (SNE23_21755) era 4190335..4191240 (-) 906 WP_048531222.1 GTPase Era -
  SNE23_RS21760 (SNE23_21760) - 4191233..4191631 (-) 399 WP_001086293.1 cytidine deaminase -
  SNE23_RS21765 (SNE23_21765) - 4191731..4192084 (-) 354 WP_048531224.1 diacylglycerol kinase family protein -
  SNE23_RS21770 (SNE23_21770) ybeY 4192081..4192551 (-) 471 WP_048531226.1 rRNA maturation RNase YbeY -
  SNE23_RS21775 (SNE23_21775) - 4192548..4194692 (-) 2145 WP_048531228.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28665.22 Da        Isoelectric Point: 8.0540

>NTDB_id=910006 SNE23_RS21745 WP_000487010.1 4189235..4189981(-) (recO) [Bacillus sp. RA(2023)]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDQYRIPVGEAVHKLLRLFYHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=910006 SNE23_RS21745 WP_000487010.1 4189235..4189981(-) (recO) [Bacillus sp. RA(2023)]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAATTGGGTAAGGTAAGTGCGATGGCAAGAGGAGCGAAAAAACCGAAAAGCCGGTTAGCATCTGTTTCGCAACTTATGA
CACATGGTCATTTCCTTATTCAAATGGGATCTGGACTTGGAACTTTGCAACAAGGCGAAATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCATATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGACCCAGAGGTATTATCATTGA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAT
TTTGTCGCCTTCTCTGTCCGGGAAGGCGGTTTTCTGTGCTCTCGTCATGCTGAACAAGATCAGTATCGTATACCGGTGGG
GGAAGCTGTTCATAAATTATTGCGTCTTTTTTACCACTTCGATCTACATAGACTTGGCAATGTATCAGTGAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGGATTTATTTGAAATCAAGACGTTTCTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81LT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552