Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SNE23_RS05950 Genome accession   NZ_CP139483
Coordinates   1147913..1149739 (+) Length   608 a.a.
NCBI ID   WP_048526703.1    Uniprot ID   A0A8T9ZEW9
Organism   Bacillus sp. RA(2023)     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142913..1154739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS05930 (SNE23_05930) - 1143220..1143894 (-) 675 WP_071757024.1 TerC family protein -
  SNE23_RS05935 (SNE23_05935) mecA 1144237..1144920 (+) 684 WP_000350711.1 adaptor protein MecA Regulator
  SNE23_RS05940 (SNE23_05940) - 1144993..1146537 (+) 1545 WP_048526701.1 cardiolipin synthase -
  SNE23_RS05945 (SNE23_05945) - 1146618..1147862 (+) 1245 WP_157409471.1 competence protein CoiA -
  SNE23_RS05950 (SNE23_05950) pepF 1147913..1149739 (+) 1827 WP_048526703.1 oligoendopeptidase F Regulator
  SNE23_RS05955 (SNE23_05955) - 1149857..1150030 (-) 174 WP_002051510.1 hypothetical protein -
  SNE23_RS05960 (SNE23_05960) - 1150260..1151153 (-) 894 WP_048526704.1 ClpXP adapter SpxH family protein -
  SNE23_RS05965 (SNE23_05965) - 1151153..1151551 (-) 399 WP_000043381.1 hypothetical protein -
  SNE23_RS05970 (SNE23_05970) - 1151732..1152310 (-) 579 WP_048526705.1 CYTH domain-containing protein -
  SNE23_RS05975 (SNE23_05975) - 1152455..1152826 (+) 372 WP_048526706.1 hypothetical protein -
  SNE23_RS05980 (SNE23_05980) - 1152857..1153495 (+) 639 WP_001081485.1 GTP pyrophosphokinase family protein -
  SNE23_RS05985 (SNE23_05985) - 1153514..1154311 (+) 798 WP_000673182.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70267.53 Da        Isoelectric Point: 4.6201

>NTDB_id=909989 SNE23_RS05950 WP_048526703.1 1147913..1149739(+) (pepF) [Bacillus sp. RA(2023)]
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDMLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIVHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=909989 SNE23_RS05950 WP_048526703.1 1147913..1149739(+) (pepF) [Bacillus sp. RA(2023)]
ATGTCTGAACAAAACACAGCAAAAACATTACCGGATCGCAACGAGATTGAAGAATCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACAGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGTGACTCTGCGAACAATTTACTTGAAGCATTGCAATATGAAGATGAAATTTCAATGCGATTAGGTAAGTTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACAAACTCTGTGTATCAAGCATTAAATGACCGCGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCATATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACACTGCAAACATTCTTGA
AAGAAAATAGAGACTTAAGTGTATATGAGCATGCGTTAGAAGAAATTACGCGTCAACGCCCTCACGTATTATCTGAAGCG
GAAGAAGCTTTATTAGCAGAAGCATCTGAAGTAATGAGTGCGTCAAGTAATACCTTTGGTATGTTGAATAATGCGGATTT
GAAATTCCCATCTATTAAAGGCGAGGATGGAGAAGAAATAGAAATTACACATGGTCGTTACATTCAGTTTTTAGAAAGTG
ATGATCGTCGTGTACGCGAAGATGCGTTCAAAGCTGTATATGAAACGTACGGAAAATATAAGAACACATTTGCAAGTACA
TTAAGCGGAGCTGTGAAACGTAATAATTTCAATGCCCGAGTTCGCAAATACGATTCTGCACGTCAAGCTGCATTAAGTAA
TAATAATATTCCTGAAGCGGTGTATGATCAACTTGTTGAATCTGTAAATGATAATTTACACTTGCTACATCGTTACATTG
ATATTCGTAAGCGTGCACTAGGGCTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AACGTGAAGTATGAAGAAGCACAAGACATGTTATTAAAGTCTTTAAATGTGCTTGGTGATGAGTATGTTGATATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCATATTCATCTGGTGCATATG
GAACAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTACACAAGAAAAACGCAACCGCACGTATACGGTGACTATTCAATCTTCGTTGCGGAAGTAGCATCAAC
TTGTAATGAAGCGCTTCTAAACGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATACTTATTAAATCATT
ATTTAGAAGGATTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAGCATATTGTTCATAAGAAAGTACAA
GAGGGACATGCGGTTACGCCAGACATGTTAACAGAGATTTACTATGATTTAAATAAGAAATATTTCGGTGATGCTTTAGT
AATCGATGAAGAAATTGGTTTAGAGTGGTCTCGTATTCCGCACTTCTACTACAACTATTACGTATACCAATACGCAACAG
GCTTTAGTGCAGCGACGGCTCTATCTAAACAAATTTTAGAAGAAGGGCAACCAGCAGTAGAACGTTACATTAATGAGTTC
TTAAAAGCAGGAAGCTCAGATTACCCAATTGAAGTGCTGAAAAAAGCTGGGGTAGATATGGCATCTCCAGAACCAGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487