Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   SNE23_RS00220 Genome accession   NZ_CP139483
Coordinates   40399..40683 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. RA(2023)     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 35399..45683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNE23_RS00185 (SNE23_00185) tmk 35552..36178 (+) 627 WP_048526380.1 dTMP kinase -
  SNE23_RS00190 (SNE23_00190) holB 36215..37198 (+) 984 WP_048526381.1 DNA polymerase III subunit delta' -
  SNE23_RS00195 (SNE23_00195) - 37204..38031 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  SNE23_RS00200 (SNE23_00200) yabA 38046..38396 (+) 351 WP_000412056.1 DNA replication initiation control protein YabA -
  SNE23_RS00205 (SNE23_00205) - 38517..39257 (+) 741 WP_001055351.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SNE23_RS00210 (SNE23_00210) - 39244..39534 (+) 291 WP_048526382.1 GIY-YIG nuclease family protein -
  SNE23_RS00215 (SNE23_00215) rsmI 39503..40378 (+) 876 WP_157409252.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SNE23_RS00220 (SNE23_00220) abrB 40399..40683 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  SNE23_RS00225 (SNE23_00225) metG 41204..43186 (+) 1983 WP_048526384.1 methionine--tRNA ligase -
  SNE23_RS00230 (SNE23_00230) - 43353..44120 (+) 768 WP_048526385.1 TatD family hydrolase -
  SNE23_RS00235 (SNE23_00235) rnmV 44337..44894 (+) 558 WP_000692830.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=909975 SNE23_RS00220 WP_000843036.1 40399..40683(-) (abrB) [Bacillus sp. RA(2023)]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=909975 SNE23_RS00220 WP_000843036.1 40399..40683(-) (abrB) [Bacillus sp. RA(2023)]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGCAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851