Detailed information NTG0909959

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABS957_RS08295
• Genome accession: NZ_CP158482
• Coordinates: 1715312..1716316 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain 1485138
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1710312..1721316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS957_RS08265 (ABS957_08265)	fghA	1710404..1711255 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
ABS957_RS08270 (ABS957_08270)	ispF	1711326..1711799 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABS957_RS08275 (ABS957_08275)	truD	1711796..1712863 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
ABS957_RS08280 (ABS957_08280)	surE	1712851..1713600 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
ABS957_RS08285 (ABS957_08285)	-	1713633..1714268 (+)	636	WP_015649078.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ABS957_RS08290 (ABS957_08290)	-	1714314..1715207 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
ABS957_RS08295 (ABS957_08295)	rpoS	1715312..1716316 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
ABS957_RS08300 (ABS957_08300)	fdxA	1716743..1717066 (-)	324	WP_003092272.1	ferredoxin FdxA	-
ABS957_RS08305 (ABS957_08305)	mutS	1717133..1719700 (-)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
ABS957_RS08310 (ABS957_08310)	-	1719826..1720833 (-)	1008	WP_012613731.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=909959 ABS957_RS08295 WP_003113871.1 1715312..1716316(+) (rpoS) [Pseudomonas aeruginosa strain 1485138]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=909959 ABS957_RS08295 WP_003113871.1 1715312..1716316(+) (rpoS) [Pseudomonas aeruginosa strain 1485138]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653