Detailed information NTG0090989

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABJ74_RS22890
• Genome accession: NZ_AP027850
• Coordinates: 4699833..4700858 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.18.04CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4694833..4705858

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ74_RS22880 (VEE64_43890)	rpmE	4697064..4697276 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABJ74_RS22885 (VEE64_43900)	priA	4697479..4699677 (+)	2199	WP_001348093.1	primosomal protein N'	Machinery gene
AABJ74_RS22890 (VEE64_43910)	cytR	4699833..4700858 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABJ74_RS22895 (VEE64_43920)	ftsN	4700950..4701909 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABJ74_RS22900 (VEE64_43930)	hslV	4702002..4702532 (+)	531	WP_137428339.1	ATP-dependent protease subunit HslV	-
AABJ74_RS22905 (VEE64_43940)	hslU	4702542..4703873 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABJ74_RS22910 (VEE64_43950)	menA	4703940..4704866 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABJ74_RS22915 (VEE64_43960)	rraA	4704959..4705444 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABJ74_RS22920 (VEE64_43970)	zapB	4705529..4705774 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=90989 AABJ74_RS22890 WP_000644904.1 4699833..4700858(+) (cytR) [Escherichia coli strain 2017.18.04CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=90989 AABJ74_RS22890 WP_000644904.1 4699833..4700858(+) (cytR) [Escherichia coli strain 2017.18.04CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628