Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   R6Z04_RS19195 Genome accession   NZ_CP139440
Coordinates   3645048..3646205 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain GUCC4     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3640048..3651205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Z04_RS19165 (R6Z04_19165) yvyF 3640301..3640720 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  R6Z04_RS19170 (R6Z04_19170) comFC 3640794..3641516 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  R6Z04_RS19175 (R6Z04_19175) comFB 3641480..3641776 (-) 297 WP_003227989.1 late competence protein ComFB -
  R6Z04_RS19180 (R6Z04_19180) comFA 3641836..3643227 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  R6Z04_RS19185 (R6Z04_19185) fakBA 3643333..3644178 (-) 846 WP_003244125.1 DegV family protein -
  R6Z04_RS19190 (R6Z04_19190) degU 3644276..3644965 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  R6Z04_RS19195 (R6Z04_19195) degS 3645048..3646205 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  R6Z04_RS19200 (R6Z04_19200) yvyE 3646422..3647075 (+) 654 WP_003227979.1 YigZ family protein -
  R6Z04_RS19205 (R6Z04_19205) tagV 3647075..3648250 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  R6Z04_RS19210 (R6Z04_19210) tagO 3648323..3649399 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  R6Z04_RS19215 (R6Z04_19215) tuaH 3649544..3650737 (-) 1194 WP_003243252.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=909819 R6Z04_RS19195 WP_003227983.1 3645048..3646205(-) (degS) [Bacillus subtilis strain GUCC4]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=909819 R6Z04_RS19195 WP_003227983.1 3645048..3646205(-) (degS) [Bacillus subtilis strain GUCC4]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATTATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTCCGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1