Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | R6Z04_RS13955 | Genome accession | NZ_CP139440 |
| Coordinates | 2652050..2652460 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain GUCC4 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2647416..2698906 | 2652050..2652460 | within | 0 |
Gene organization within MGE regions
Location: 2647416..2698906
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R6Z04_RS13930 (R6Z04_13930) | yqeF | 2647583..2648314 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| R6Z04_RS13935 (R6Z04_13935) | cwlH | 2648566..2649318 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| R6Z04_RS13940 (R6Z04_13940) | yqeD | 2649505..2650131 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| R6Z04_RS13945 (R6Z04_13945) | gnd | 2650150..2651043 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| R6Z04_RS13950 (R6Z04_13950) | yqeB | 2651295..2652017 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| R6Z04_RS13955 (R6Z04_13955) | nucA/comI | 2652050..2652460 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| R6Z04_RS13960 (R6Z04_13960) | - | 2652656..2653006 (+) | 351 | Protein_2703 | sigma-70 family RNA polymerase sigma factor | - |
| R6Z04_RS13965 (R6Z04_13965) | spoIVCA | 2653034..2654494 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| R6Z04_RS13970 (R6Z04_13970) | - | 2654452..2654630 (-) | 179 | Protein_2705 | hypothetical protein | - |
| R6Z04_RS13975 (R6Z04_13975) | arsC | 2654985..2655404 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| R6Z04_RS13980 (R6Z04_13980) | acr3 | 2655416..2656456 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| R6Z04_RS13985 (R6Z04_13985) | arsK | 2656479..2656919 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| R6Z04_RS13990 (R6Z04_13990) | arsR | 2656980..2657297 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| R6Z04_RS13995 (R6Z04_13995) | yqcI | 2657669..2658433 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| R6Z04_RS14000 (R6Z04_14000) | rapE | 2658876..2660003 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| R6Z04_RS14005 (R6Z04_14005) | phrE | 2659993..2660127 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| R6Z04_RS14010 (R6Z04_14010) | - | 2660237..2660395 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| R6Z04_RS14015 (R6Z04_14015) | yqcG | 2660765..2662360 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| R6Z04_RS14020 (R6Z04_14020) | yqcF | 2662375..2662953 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| R6Z04_RS14025 (R6Z04_14025) | - | 2663071..2663217 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| R6Z04_RS14030 (R6Z04_14030) | - | 2663214..2663576 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| R6Z04_RS14035 (R6Z04_14035) | - | 2663592..2664071 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| R6Z04_RS14040 (R6Z04_14040) | cwlA | 2664236..2665054 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| R6Z04_RS14045 (R6Z04_14045) | skhD | 2665099..2665521 (-) | 423 | WP_003246208.1 | holin family protein | - |
| R6Z04_RS14050 (R6Z04_14050) | xepA | 2665566..2666459 (-) | 894 | WP_003246010.1 | phage-like element PBSX protein XepA | - |
| R6Z04_RS14055 (R6Z04_14055) | yqcE | 2666547..2666711 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| R6Z04_RS14060 (R6Z04_14060) | yqcD | 2666708..2667043 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| R6Z04_RS14065 (R6Z04_14065) | yqcC | 2667053..2668153 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| R6Z04_RS14070 (R6Z04_14070) | - | 2668156..2668428 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| R6Z04_RS14075 (R6Z04_14075) | yqcA | 2668425..2669003 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| R6Z04_RS14080 (R6Z04_14080) | yqbT | 2668987..2670033 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| R6Z04_RS14085 (R6Z04_14085) | yqbS | 2670026..2670451 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| R6Z04_RS14090 (R6Z04_14090) | yqbR | 2670464..2670727 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| R6Z04_RS14095 (R6Z04_14095) | yqbQ | 2670724..2671704 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| R6Z04_RS14100 (R6Z04_14100) | yqbP | 2671717..2672376 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| R6Z04_RS14105 (R6Z04_14105) | yqbO | 2672369..2677126 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| R6Z04_RS14110 (R6Z04_14110) | - | 2677129..2677266 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| R6Z04_RS14115 (R6Z04_14115) | - | 2677308..2677757 (-) | 450 | WP_003229933.1 | phage tail assembly chaperone | - |
| R6Z04_RS14120 (R6Z04_14120) | txpA | 2677903..2678082 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| R6Z04_RS14125 (R6Z04_14125) | bsrH | 2678462..2678551 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| R6Z04_RS14130 (R6Z04_14130) | yqbM | 2678805..2679248 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| R6Z04_RS14135 (R6Z04_14135) | yqbK | 2679251..2680651 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| R6Z04_RS14140 (R6Z04_14140) | - | 2680652..2680843 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| R6Z04_RS14145 (R6Z04_14145) | yqbJ | 2680840..2681277 (-) | 438 | WP_003229927.1 | phage tail terminator family protein | - |
| R6Z04_RS14150 (R6Z04_14150) | yqbI | 2681290..2681793 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| R6Z04_RS14155 (R6Z04_14155) | yqbH | 2681790..2682152 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| R6Z04_RS14160 (R6Z04_14160) | gkpG | 2682149..2682544 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| R6Z04_RS14165 (R6Z04_14165) | yqbF | 2682548..2682859 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| R6Z04_RS14170 (R6Z04_14170) | skdG | 2682870..2683805 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| R6Z04_RS14175 (R6Z04_14175) | yqbD | 2683824..2684792 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| R6Z04_RS14180 (R6Z04_14180) | - | 2684825..2685478 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| R6Z04_RS14185 (R6Z04_14185) | yqbB | 2685519..2686436 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| R6Z04_RS14190 (R6Z04_14190) | yqbA | 2686433..2687965 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| R6Z04_RS14195 (R6Z04_14195) | stmB | 2687969..2689264 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| R6Z04_RS14200 (R6Z04_14200) | terS | 2689257..2689976 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| R6Z04_RS14205 (R6Z04_14205) | - | 2690044..2690508 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| R6Z04_RS14210 (R6Z04_14210) | yqaQ | 2690652..2691107 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| R6Z04_RS14215 (R6Z04_14215) | - | 2691305..2692234 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| R6Z04_RS14220 (R6Z04_14220) | yqaO | 2692308..2692514 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| R6Z04_RS14225 (R6Z04_14225) | yqaN | 2692596..2693024 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| R6Z04_RS14230 (R6Z04_14230) | - | 2693120..2693269 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| R6Z04_RS14235 (R6Z04_14235) | sknM | 2693260..2694201 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| R6Z04_RS14240 (R6Z04_14240) | yqaL | 2694083..2694760 (-) | 678 | WP_010886575.1 | DnaD domain-containing protein | - |
| R6Z04_RS14245 (R6Z04_14245) | recT | 2694836..2695690 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| R6Z04_RS14250 (R6Z04_14250) | yqaJ | 2695693..2696652 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| R6Z04_RS14255 (R6Z04_14255) | yqaI | 2696758..2696952 (-) | 195 | WP_003229905.1 | YqaI family protein | - |
| R6Z04_RS14260 (R6Z04_14260) | - | 2696912..2697085 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| R6Z04_RS14265 (R6Z04_14265) | sknH | 2697082..2697339 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| R6Z04_RS14270 (R6Z04_14270) | yqaG | 2697336..2697905 (-) | 570 | WP_004398626.1 | helix-turn-helix domain-containing protein | - |
| R6Z04_RS14275 (R6Z04_14275) | - | 2697979..2698119 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| R6Z04_RS14280 (R6Z04_14280) | yqaF | 2698149..2698379 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| R6Z04_RS14285 (R6Z04_14285) | sknR | 2698556..2698906 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=909801 R6Z04_RS13955 WP_009967785.1 2652050..2652460(-) (nucA/comI) [Bacillus subtilis strain GUCC4]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=909801 R6Z04_RS13955 WP_009967785.1 2652050..2652460(-) (nucA/comI) [Bacillus subtilis strain GUCC4]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |