Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RI049_RS20680 Genome accession   NZ_CP139439
Coordinates   4345886..4347268 (-) Length   460 a.a.
NCBI ID   WP_045781277.1    Uniprot ID   -
Organism   Cedecea neteri strain A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4340886..4352268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI049_RS20670 (RI049_20670) ettA 4342655..4344322 (+) 1668 WP_045781279.1 energy-dependent translational throttle protein EttA -
  RI049_RS20675 (RI049_20675) nadR 4344607..4345839 (-) 1233 WP_045781278.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  RI049_RS20680 (RI049_20680) radA 4345886..4347268 (-) 1383 WP_045781277.1 DNA repair protein RadA Machinery gene
  RI049_RS20685 (RI049_20685) serB 4347283..4348260 (-) 978 WP_045781276.1 phosphoserine phosphatase -
  RI049_RS20690 (RI049_20690) - 4348465..4349100 (+) 636 WP_045781275.1 YtjB family periplasmic protein -
  RI049_RS20695 (RI049_20695) lplA 4349175..4350191 (+) 1017 WP_321218537.1 lipoate--protein ligase LplA -
  RI049_RS20700 (RI049_20700) deoD 4350533..4351252 (-) 720 WP_008460099.1 purine-nucleoside phosphorylase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49569.19 Da        Isoelectric Point: 7.1552

>NTDB_id=909736 RI049_RS20680 WP_045781277.1 4345886..4347268(-) (radA) [Cedecea neteri strain A1]
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPQVARNERLSGYAGSAGVSRVQKLSDISLEELPRFSTG
FKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSEQMKTLYVTGEESLQQVAMRAHRLGLPTQNLNMLSETSIE
QICMIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTKGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VMLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTPGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRALPQDLVVFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPQANVPKKVPEGMQVFGVKKLADALSVFDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=909736 RI049_RS20680 WP_045781277.1 4345886..4347268(-) (radA) [Cedecea neteri strain A1]
GTGGCGAAAGCTCCAAAACGCGCATTTGTTTGTAACGAGTGTGGTGCGGATTACCCGCGCTGGCAGGGGCAGTGCAGCGC
CTGCCACGCGTGGAATACCATTACCGAAGTGCGCATCGCCGCTTCTCCACAGGTTGCCCGCAACGAACGCCTTTCCGGCT
ATGCCGGAAGCGCGGGCGTCAGCCGGGTACAAAAGCTTTCGGACATCAGCCTCGAAGAGCTGCCGCGCTTCTCCACCGGT
TTTAAAGAGTTCGACCGTGTGTTGGGCGGCGGTGTAGTACCGGGCAGTGCCATTCTGATTGGTGGTAACCCGGGGGCCGG
GAAATCAACGCTGCTGCTGCAAACGCTTTGCAAGCTGAGCGAACAAATGAAAACCCTGTACGTCACCGGTGAAGAGTCAC
TTCAGCAGGTGGCGATGCGCGCGCACCGCCTGGGCCTGCCGACGCAAAACCTGAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGTATGATCGCCGAGGAAGAACAGCCGAAGCTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGATGT
ACAGTCTTCGCCGGGCAGCGTGGCGCAGGTGCGTGAAACTGCAGCCTACCTGACGCGCTTTGCGAAGACGAAAGGCGTGG
CAATCGTGATGGTGGGGCACGTCACTAAAGACGGCTCTCTGGCGGGGCCAAAAGTCCTTGAGCACTGTATCGACTGTTCA
GTCATGCTCGACGGTGATGCTGATTCCCGCTTCCGCACTCTGCGCAGCCATAAAAACCGCTTTGGGGCGGTGAACGAGCT
GGGTGTGTTCGCGATGACCGAGCAGGGGCTGCGCGAAGTCAGCAACCCGTCAGCTATCTTCCTGAGCCGGGGCGATGAAG
TGACGCCGGGCAGCTCGGTGATGGTAGTCTGGGAAGGGACGCGCCCGCTGCTGGTTGAAATTCAGGCGCTGGTGGATCAG
TCAATGATGTCCAATCCACGCCGCGTGGCCGTTGGCCTGGAGCAAAACCGTCTGGCGATTTTGCTGGCGGTACTGCACCG
TCACGGTGGCCTGCAGATGGCCGATCAGGACGTGTTTGTGAACGTGGTTGGTGGCGTGAAAGTGACCGAAACCAGTGCCG
ACCTGGCGCTGCTGTTAGCGATGGTTTCCAGCCTGCGCGACAGAGCTTTACCGCAGGATTTAGTGGTGTTTGGTGAAGTC
GGGCTGGCGGGTGAAATTCGCCCGGTACCCAGCGGCCAGGAGCGTATTTCCGAAGCGGCTAAACACGGCTTTAAGCGCGC
GATTGTGCCGCAGGCCAACGTACCGAAAAAAGTTCCTGAAGGGATGCAGGTCTTCGGCGTGAAAAAACTTGCTGATGCGC
TTTCTGTATTCGACGACTTATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

AAA domain (AAA_25)

(89-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus pneumoniae Rx1

43.64

99.13

0.433
  radA Streptococcus pneumoniae D39

43.64

99.13

0.433
  radA Streptococcus pneumoniae R6

43.64

99.13

0.433
  radA Streptococcus pneumoniae TIGR4

43.64

99.13

0.433
  radA Streptococcus mitis NCTC 12261

43.64

99.13

0.433
  radA Streptococcus mitis SK321

43.64

99.13

0.433