Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RI049_RS15715 Genome accession   NZ_CP139439
Coordinates   3287236..3287865 (-) Length   209 a.a.
NCBI ID   WP_321218100.1    Uniprot ID   -
Organism   Cedecea neteri strain A1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282236..3292865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RI049_RS15700 (RI049_15700) helD 3282469..3284523 (-) 2055 WP_045781955.1 DNA helicase IV -
  RI049_RS15705 (RI049_15705) - 3284654..3285100 (+) 447 WP_045781954.1 YccF domain-containing protein -
  RI049_RS15710 (RI049_15710) yccS 3285113..3287251 (+) 2139 WP_321220071.1 YccS family putative transporter -
  RI049_RS15715 (RI049_15715) sxy/tfoX 3287236..3287865 (-) 630 WP_321218100.1 TfoX/Sxy family DNA transformation protein Regulator
  RI049_RS15720 (RI049_15720) sulA 3288083..3288592 (+) 510 WP_045781952.1 SOS-induced cell division inhibitor SulA -
  RI049_RS15725 (RI049_15725) ompA 3288950..3290005 (+) 1056 WP_045781951.1 porin OmpA -
  RI049_RS15730 (RI049_15730) matP 3290097..3290549 (-) 453 WP_008461251.1 macrodomain Ter protein MatP -
  RI049_RS15735 (RI049_15735) - 3290726..3292480 (+) 1755 WP_321218101.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24189.22 Da        Isoelectric Point: 10.4497

>NTDB_id=909733 RI049_RS15715 WP_321218100.1 3287236..3287865(-) (sxy/tfoX) [Cedecea neteri strain A1]
MKRVTFLRINKSREYLSSLGKIGCRPLFGGYSLTVEGVVFAMVAEGELYLRACEKCAQYFIQKSAPPLMYSKRGLPVALN
YYRVDEELWENPDKLVQLSSQALRSAQREKTQIKIRSRRLKDLPNISLNIEVMLREVGINDPQTLQLFGPKRSWLKLRST
RKTVGIKVLLALAGAIRGVHEAVLPADVRKELTDWWRRYEQRQHPYSEH

Nucleotide


Download         Length: 630 bp        

>NTDB_id=909733 RI049_RS15715 WP_321218100.1 3287236..3287865(-) (sxy/tfoX) [Cedecea neteri strain A1]
ATGAAAAGGGTGACATTTCTTAGAATTAATAAATCACGGGAATATCTTTCGTCACTGGGTAAAATCGGTTGTCGGCCATT
ATTTGGCGGTTATAGTCTGACCGTCGAAGGTGTGGTTTTTGCTATGGTGGCGGAAGGCGAGCTTTACCTGCGAGCTTGTG
AAAAGTGTGCGCAGTATTTCATCCAAAAATCGGCCCCCCCTCTGATGTACAGTAAACGTGGGCTTCCTGTCGCGCTGAAT
TACTACCGTGTTGATGAAGAACTTTGGGAAAATCCGGACAAACTCGTCCAGCTCTCTTCCCAGGCGTTAAGAAGTGCCCA
ACGTGAGAAGACGCAGATTAAGATACGTTCTCGCCGCCTGAAGGATCTCCCCAACATTTCCCTGAATATTGAAGTTATGC
TTCGTGAGGTGGGTATCAATGATCCACAAACGCTGCAACTCTTTGGTCCCAAACGGTCATGGCTAAAATTACGCAGCACC
AGGAAAACGGTAGGCATTAAAGTGTTGCTCGCGCTTGCGGGGGCTATTCGTGGTGTTCATGAGGCGGTACTGCCCGCCGA
TGTTCGAAAAGAATTGACGGACTGGTGGCGCCGCTATGAGCAGCGCCAACATCCTTACTCGGAGCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.821

93.301

0.493