Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   SPM78_RS21240 Genome accession   NZ_CP139424
Coordinates   4488960..4489517 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 136790     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4483960..4494517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS21220 (SPM78_21220) pilR 4485236..4486573 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  SPM78_RS21225 (SPM78_21225) thiO 4486619..4487713 (-) 1095 WP_023096126.1 glycine oxidase ThiO -
  SPM78_RS21230 (SPM78_21230) - 4487848..4488357 (+) 510 WP_009316266.1 Tfp pilus assembly protein FimT/FimU -
  SPM78_RS21235 (SPM78_21235) - 4488463..4488969 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  SPM78_RS21240 (SPM78_21240) pilV 4488960..4489517 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  SPM78_RS21245 (SPM78_21245) pilW 4489514..4490338 (+) 825 WP_023096127.1 type 4a pilus minor pilin PilW -
  SPM78_RS21250 (SPM78_21250) pilX 4490335..4490922 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  SPM78_RS21255 (SPM78_21255) pilY1 4490934..4494425 (+) 3492 WP_023096128.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=909628 SPM78_RS21240 WP_003094697.1 4488960..4489517(+) (pilV) [Pseudomonas aeruginosa strain 136790]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=909628 SPM78_RS21240 WP_003094697.1 4488960..4489517(+) (pilV) [Pseudomonas aeruginosa strain 136790]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCAGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978