Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   SPM78_RS05405 Genome accession   NZ_CP139424
Coordinates   1126873..1127508 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 136790     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1121873..1132508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPM78_RS05390 (SPM78_05390) - 1122579..1123823 (+) 1245 WP_023095394.1 lipoprotein-releasing ABC transporter permease subunit -
  SPM78_RS05395 (SPM78_05395) - 1123911..1124444 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  SPM78_RS05400 (SPM78_05400) comA 1124575..1126800 (+) 2226 WP_023095395.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SPM78_RS05405 (SPM78_05405) exbB 1126873..1127508 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  SPM78_RS05410 (SPM78_05410) - 1127505..1127945 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  SPM78_RS05415 (SPM78_05415) lpxK 1127945..1128943 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  SPM78_RS05420 (SPM78_05420) - 1128981..1129166 (+) 186 WP_003091157.1 Trm112 family protein -
  SPM78_RS05425 (SPM78_05425) kdsB 1129166..1129930 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  SPM78_RS05430 (SPM78_05430) - 1129930..1130394 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  SPM78_RS05435 (SPM78_05435) murB 1130391..1131410 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=909613 SPM78_RS05405 WP_003091163.1 1126873..1127508(+) (exbB) [Pseudomonas aeruginosa strain 136790]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=909613 SPM78_RS05405 WP_003091163.1 1126873..1127508(+) (exbB) [Pseudomonas aeruginosa strain 136790]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTTGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGTTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81