Detailed information NTG0909592

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SLW71_RS20445
• Genome accession: NZ_CP139421
• Coordinates: 5064361..5065734 (-)
• Length: 457 a.a.
• NCBI ID: WP_320898992.1
• Uniprot ID: -
• Organism: Algoriphagus sp. NG3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5059361..5070734

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SLW71_RS20435 (SLW71_20435)	-	5059871..5061715 (-)	1845	WP_320898990.1	glycoside hydrolase family 2 protein	-
SLW71_RS20440 (SLW71_20440)	-	5061843..5063387 (-)	1545	WP_320898991.1	glycoside hydrolase family 43 protein	-
SLW71_RS20445 (SLW71_20445)	radA	5064361..5065734 (-)	1374	WP_320898992.1	DNA repair protein RadA	Machinery gene
SLW71_RS20450 (SLW71_20450)	-	5065743..5066885 (-)	1143	WP_320898993.1	PDDEXK nuclease domain-containing protein	-
SLW71_RS20455 (SLW71_20455)	polA	5067041..5069869 (-)	2829	WP_320898994.1	DNA polymerase I	-
SLW71_RS20460 (SLW71_20460)	-	5070030..5070344 (+)	315	WP_320898995.1	hypothetical protein	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50212.91 Da
• Isoelectric Point: 6.8239

>NTDB_id=909592 SLW71_RS20445 WP_320898992.1 5064361..5065734(-) (radA) [Algoriphagus sp. NG3]
MAKIKTSFFCQNCGAQSPKWLGKCPSCGEWNTYVEEIVQKEESGKGSWKTPSSGTKKASTPKKIQEVNYEEQPRYVTGDA
ELDRVLGGGIVPGSLVLIGGEPGIGKSTLMLQIALILKEKKILYVSGEENEAQIKMRADRMAAKNPECYVLSETNTQHIF
QQIEALKPDLLIIDSIQTLTSQYVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKVLEHMVDTVLQF
EGDRHMSYRILRTSKNRFGSTHELGIYEMRVEGLRPVANPSEILLTQREEVLNGVAIGAMMEGNRPLLIEIQSLVSPATY
GTPQRSSTGHDAKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGLRVDDPALDLAVCASLISSYEDTPVSEQICFAAEVGLG
GEIRAVHRIENRIAEAEKLGFKKIIVSKYAVKGLDLGKYKIEVMAVSKLEEVYQKIF

Nucleotide

• Length: 1374 bp

>NTDB_id=909592 SLW71_RS20445 WP_320898992.1 5064361..5065734(-) (radA) [Algoriphagus sp. NG3]
ATGGCCAAAATCAAAACCTCTTTCTTCTGTCAAAACTGCGGTGCACAAAGTCCTAAATGGCTTGGCAAGTGTCCTTCTTG
CGGGGAATGGAATACCTATGTAGAGGAAATTGTCCAAAAGGAAGAATCGGGCAAAGGATCATGGAAAACTCCTTCTTCGG
GTACAAAAAAAGCCAGCACACCCAAGAAAATCCAAGAGGTGAATTATGAGGAACAGCCACGGTATGTCACGGGAGATGCG
GAATTAGACCGCGTTCTGGGAGGTGGAATTGTACCCGGTTCGCTGGTGCTGATCGGTGGTGAACCTGGAATCGGAAAGTC
CACGCTTATGCTGCAGATAGCCCTGATTCTTAAAGAAAAGAAAATTTTATATGTCTCCGGAGAGGAAAATGAAGCCCAGA
TAAAAATGCGTGCGGATCGTATGGCCGCAAAAAATCCTGAGTGCTATGTACTCTCTGAGACGAATACCCAACATATTTTC
CAGCAGATTGAAGCGCTCAAACCCGATTTGTTGATTATAGATTCTATTCAAACACTCACCTCTCAATATGTAGAATCTGC
CGCAGGCTCAGTCTCTCAGGTACGGGAATGTACTGCTGAGTTGATGAAGTTTGCCAAGGAAACCGGAACGCCAGTTTTCC
TGATCGGCCATATCACCAAGGATGGGTCTATCGCAGGGCCAAAAGTATTGGAGCATATGGTGGATACCGTCTTGCAGTTT
GAAGGGGACAGACATATGAGCTATAGGATCCTGAGGACTTCCAAAAACCGTTTTGGATCCACCCACGAATTGGGTATTTA
CGAGATGCGTGTTGAGGGTCTTCGTCCAGTCGCAAACCCTTCCGAAATTCTCCTAACCCAGCGTGAAGAAGTTTTAAACG
GAGTAGCCATAGGGGCTATGATGGAAGGAAACCGCCCTTTGCTGATAGAGATACAATCCCTGGTAAGTCCCGCTACGTAT
GGAACTCCTCAGCGAAGCAGTACAGGTCACGATGCCAAGCGATTGAATATGTTGTTGGCAGTTTTGGAAAAGCGTGGTGG
AATGCGCCTCGGTCAGCAAGATGTGTTCTTAAATGTCGCGGGAGGTCTACGTGTGGACGATCCTGCTTTGGATCTGGCAG
TCTGTGCGTCATTGATTTCCAGTTACGAGGATACTCCTGTATCGGAGCAAATTTGCTTTGCTGCAGAAGTTGGCTTGGGA
GGTGAAATACGGGCAGTGCATCGGATAGAAAACCGGATTGCAGAGGCTGAAAAATTGGGATTTAAAAAAATAATTGTTTC
AAAATATGCTGTCAAAGGTCTTGATCTAGGGAAATACAAAATCGAGGTGATGGCTGTGAGTAAATTGGAAGAGGTTTATC
AGAAGATATTCTGA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

• AAA domain (AAA_25) (82-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	52.851	99.781	0.527
radA	Streptococcus pneumoniae Rx1	51.092	100	0.512
radA	Streptococcus pneumoniae D39	51.092	100	0.512
radA	Streptococcus pneumoniae R6	51.092	100	0.512
radA	Streptococcus pneumoniae TIGR4	51.092	100	0.512
radA	Streptococcus mitis NCTC 12261	50.873	100	0.51
radA	Streptococcus mitis SK321	50.655	100	0.508