Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SM123_RS03155 Genome accession   NZ_CP139419
Coordinates   687636..688346 (-) Length   236 a.a.
NCBI ID   WP_049514292.1    Uniprot ID   A0A5J6LNW3
Organism   Streptococcus lingualis strain S5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 682636..693346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS03135 (SM123_03135) - 683005..684354 (+) 1350 WP_118227907.1 hemolysin family protein -
  SM123_RS03140 (SM123_03140) - 684761..685738 (+) 978 WP_070588756.1 ABC transporter substrate-binding protein -
  SM123_RS03145 (SM123_03145) - 685749..686642 (+) 894 WP_003005682.1 ABC transporter permease -
  SM123_RS03150 (SM123_03150) - 686652..687455 (+) 804 WP_014713718.1 ABC transporter ATP-binding protein -
  SM123_RS03155 (SM123_03155) treR 687636..688346 (-) 711 WP_049514292.1 trehalose operon repressor Regulator
  SM123_RS03160 (SM123_03160) - 688458..690767 (+) 2310 WP_320909804.1 endonuclease/exonuclease/phosphatase family protein -
  SM123_RS03165 (SM123_03165) pflA 690981..691775 (+) 795 WP_003005017.1 pyruvate formate-lyase-activating protein -
  SM123_RS03170 (SM123_03170) - 691900..692835 (+) 936 WP_003005572.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27549.50 Da        Isoelectric Point: 7.6657

>NTDB_id=909525 SM123_RS03155 WP_049514292.1 687636..688346(-) (treR) [Streptococcus lingualis strain S5]
MKKYQQIYQILKEQILEEKYLVGDFLPSENDLKEHYQVSRDTIRKALKLLQEEGFIETVQGMGSQVSRQAHFDFPVSQLT
SYQEIVKASGLHSETNVIRLEKISIDEKGAKKTGFPLHRLVWKVTRQRVVDGVASVLDIDYLDRELTPGLTKEIAQHSIY
HYIEEDLKLQIGYAKKEILISPIDNRDKILLDLGKDQHVVTVRSQVHLADGRQFQFTESRHKLDKFHFVDYAERRK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=909525 SM123_RS03155 WP_049514292.1 687636..688346(-) (treR) [Streptococcus lingualis strain S5]
ATGAAAAAATACCAACAAATCTACCAAATTTTAAAAGAGCAAATACTAGAAGAAAAATATCTAGTCGGGGATTTTCTGCC
TAGTGAGAACGACTTAAAAGAGCACTACCAGGTCAGTCGCGATACCATCCGTAAAGCCCTCAAGCTCTTGCAGGAAGAAG
GCTTTATCGAGACTGTTCAAGGAATGGGGTCGCAAGTTTCTAGACAAGCTCACTTTGACTTCCCCGTTTCCCAATTAACC
AGCTATCAAGAAATCGTCAAAGCTTCTGGTCTTCACTCAGAAACCAATGTCATTCGTTTGGAAAAAATCAGTATCGATGA
AAAAGGAGCTAAAAAGACAGGTTTTCCCCTTCACCGTTTGGTTTGGAAAGTAACCCGGCAACGGGTGGTGGATGGCGTCG
CTTCAGTCTTAGATATTGATTACCTAGATAGAGAGCTCACCCCTGGCCTTACTAAGGAAATTGCCCAGCACTCTATCTAC
CACTATATAGAAGAAGACTTGAAATTGCAGATTGGCTATGCTAAGAAAGAAATCTTGATTTCACCAATCGATAATCGCGA
TAAAATCTTACTGGATCTTGGAAAAGACCAACACGTGGTGACGGTCCGCTCCCAAGTTCACCTAGCAGACGGTCGGCAAT
TCCAGTTCACCGAAAGCCGACACAAATTAGACAAGTTTCATTTTGTCGACTATGCAGAGCGGAGAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5J6LNW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

56.78

100

0.568