Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SM123_RS02660 Genome accession   NZ_CP139419
Coordinates   583059..584819 (+) Length   586 a.a.
NCBI ID   WP_201036779.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 578059..589819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS02640 (SM123_02640) scrK 579128..580027 (+) 900 WP_023918997.1 fructokinase ScrK -
  SM123_RS02645 (SM123_02645) - 580275..580685 (+) 411 WP_320909775.1 peptide deformylase -
  SM123_RS02650 (SM123_02650) - 580821..581267 (+) 447 WP_298620032.1 MarR family winged helix-turn-helix transcriptional regulator -
  SM123_RS02655 (SM123_02655) rcrP 581264..583066 (+) 1803 WP_320909776.1 ABC transporter ATP-binding protein Regulator
  SM123_RS02660 (SM123_02660) rcrQ 583059..584819 (+) 1761 WP_201036779.1 ABC transporter ATP-binding protein Regulator
  SM123_RS02665 (SM123_02665) - 585429..585944 (+) 516 WP_320909777.1 phosphatase PAP2 family protein -
  SM123_RS02670 (SM123_02670) - 586028..586654 (+) 627 WP_320909778.1 GNAT family N-acetyltransferase -
  SM123_RS02675 (SM123_02675) queG 586953..588092 (-) 1140 WP_070466486.1 tRNA epoxyqueuosine(34) reductase QueG -
  SM123_RS02680 (SM123_02680) manA 588208..589152 (+) 945 WP_049522813.1 mannose-6-phosphate isomerase, class I -

Sequence

Protein


Download         Length: 586 a.a.        Molecular weight: 65354.12 Da        Isoelectric Point: 5.4419

>NTDB_id=909523 SM123_RS02660 WP_201036779.1 583059..584819(+) (rcrQ) [Streptococcus lingualis strain S5]
MHKTKQESSLWRQLSPYLKGFHLFFLVAILFSVVSSIITVIGPDKLKEITDTITKGMGGVIDIDKITSIALTLAILYGVG
ALVSYSSSFIISTMIQRFAERLRNAIAEKINRVPLQYFDSHEQGDTLSRVTNDVDLMTQSFNQSLVQMVSSIVLLIGSIF
MMFKTDWHLAVTAIVSVFAGFALSSIIMVKSQPLFKQQQDNLAKVSGYVEEIYSGHNVVISYNGRHQAKDHFDAINQDLY
HSMWKSQFFSGIMMPLMQFVGNFGYVMVCIVGAVLTINGDITIGTIVAFMTYVRIFTQPIGQMAQGITQLQSASAAMGRV
FEFLDEEEMEDESQKTRQLETPKGHVTFEHVRFGYSPDKTIIHDFTAEAKPGQKVAIVGPTGAGKTTMVNLLMRFYDIQA
GKITIDGVDTKAMSREEVHDAFSMVLQDTWLFEGTIRENLVFNQTDISDEAVEAATRAVGVHHFIRTLPNGYDTVLDDSV
TLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQ
GNHQELMSQNGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1761 bp        

>NTDB_id=909523 SM123_RS02660 WP_201036779.1 583059..584819(+) (rcrQ) [Streptococcus lingualis strain S5]
ATGCATAAAACAAAACAAGAATCGTCCCTTTGGAGACAACTTTCTCCCTATTTGAAGGGCTTCCACCTATTTTTCCTAGT
TGCTATCCTCTTTTCGGTCGTATCGAGTATTATCACGGTTATTGGACCGGATAAATTAAAAGAAATCACGGATACTATCA
CAAAAGGGATGGGAGGAGTCATTGATATTGACAAGATCACTTCGATTGCTCTGACCTTAGCCATCCTTTATGGAGTTGGA
GCACTAGTGTCCTACAGCAGTAGCTTCATTATCTCAACGATGATTCAGCGCTTCGCAGAACGCTTGCGCAATGCCATCGC
TGAAAAGATCAATCGTGTACCCCTCCAATATTTTGATAGTCACGAACAAGGAGATACCTTGTCTCGTGTGACCAATGACG
TGGATTTGATGACCCAATCCTTTAACCAAAGCTTGGTTCAAATGGTCTCCTCTATCGTCTTATTGATCGGCTCCATCTTC
ATGATGTTTAAGACGGACTGGCACTTAGCTGTCACAGCGATTGTATCCGTCTTTGCTGGCTTTGCTCTTTCTAGCATCAT
TATGGTCAAGAGTCAGCCTTTGTTTAAACAGCAACAAGATAATCTTGCCAAAGTTTCAGGCTATGTTGAAGAAATCTATA
GTGGCCACAATGTTGTTATTTCCTATAATGGCCGCCATCAAGCTAAAGATCATTTTGATGCCATCAACCAAGATTTGTAC
CATAGCATGTGGAAATCCCAATTCTTCTCTGGGATCATGATGCCCTTGATGCAGTTTGTAGGGAATTTCGGCTATGTCAT
GGTCTGTATCGTTGGGGCTGTCCTCACCATTAATGGAGACATTACCATCGGGACAATTGTGGCCTTTATGACCTATGTCC
GCATCTTTACCCAACCAATTGGTCAAATGGCCCAAGGAATTACCCAATTGCAATCAGCCAGTGCTGCTATGGGGCGTGTC
TTTGAATTCTTAGACGAAGAAGAAATGGAAGACGAATCCCAAAAAACACGTCAATTGGAAACACCAAAAGGTCATGTCAC
CTTTGAGCATGTTCGCTTTGGCTATTCACCAGACAAGACTATTATCCATGACTTTACAGCTGAAGCCAAACCGGGGCAAA
AAGTGGCCATTGTTGGTCCGACAGGTGCAGGTAAGACGACCATGGTCAATCTCTTGATGCGTTTTTACGACATTCAAGCT
GGTAAAATTACCATCGATGGTGTGGATACTAAGGCCATGAGCCGAGAAGAAGTTCATGATGCCTTTTCGATGGTCTTGCA
AGATACCTGGCTATTTGAGGGGACCATTCGAGAAAACCTGGTCTTCAATCAAACGGATATTTCAGACGAAGCGGTGGAAG
CAGCAACACGAGCTGTTGGGGTCCATCACTTTATTCGGACCTTGCCGAATGGTTATGACACCGTGCTAGATGATTCTGTC
ACCTTGTCCGTCGGTCAAAAGCAACTCTTGACCATTGCGCGTGCCCTCTTGAAGGATGCCCCGCTCCTCATCTTGGATGA
AGCAACCTCATCTGTCGATACCCGTACAGAAGAGTTGATTCAAAAAGCCATGGACAAACTCATGGAAGGCCGGACCTCCT
TTGTCATTGCCCATCGCTTGTCCACTATCCGTAATGCGGATCTGATTCTCGTGATGAAAGATGGAAATATTATCGAGCAG
GGTAACCACCAAGAACTCATGAGCCAAAATGGCTTCTATGCCGATCTCTACAATAGCCAATTCACAGAAGAAGTAGCGTA
A

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(26-299)

ABC transporter (ABC_tran)

(364-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

77.108

99.147

0.765