Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SM123_RS02655 Genome accession   NZ_CP139419
Coordinates   581264..583066 (+) Length   600 a.a.
NCBI ID   WP_320909776.1    Uniprot ID   -
Organism   Streptococcus lingualis strain S5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 576264..588066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM123_RS02635 (SM123_02635) - 577050..578969 (+) 1920 WP_003008594.1 sucrose-specific PTS transporter subunit IIBC -
  SM123_RS02640 (SM123_02640) scrK 579128..580027 (+) 900 WP_023918997.1 fructokinase ScrK -
  SM123_RS02645 (SM123_02645) - 580275..580685 (+) 411 WP_320909775.1 peptide deformylase -
  SM123_RS02650 (SM123_02650) - 580821..581267 (+) 447 WP_298620032.1 MarR family winged helix-turn-helix transcriptional regulator -
  SM123_RS02655 (SM123_02655) rcrP 581264..583066 (+) 1803 WP_320909776.1 ABC transporter ATP-binding protein Regulator
  SM123_RS02660 (SM123_02660) rcrQ 583059..584819 (+) 1761 WP_201036779.1 ABC transporter ATP-binding protein Regulator
  SM123_RS02665 (SM123_02665) - 585429..585944 (+) 516 WP_320909777.1 phosphatase PAP2 family protein -
  SM123_RS02670 (SM123_02670) - 586028..586654 (+) 627 WP_320909778.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66302.12 Da        Isoelectric Point: 9.1553

>NTDB_id=909522 SM123_RS02655 WP_320909776.1 581264..583066(+) (rcrP) [Streptococcus lingualis strain S5]
MINIFRRLTAKEWGVIALSTVFICLAVWMDLKTPEYLSDITTLLAKEGTKVSDIMEPGSKMLLFSFGSFLMAVLVGFLAS
RVAASFTTRLRGEIFHQVMDYSDAEIKKFSVPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAIWALTKIWGKSSAWTTS
VGIAVLMVLILLSVLVLIAFPRQQKVQGLTDALNATTRESLTGVRVVRAYNAEAYQNEKFQAENKGLTRLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGAHLINDIAMPKDPTKIFTSPALADRTKVFSDMITFSSYAMQVVVGFMMMVAILIILPRAL
VSAKRINQVLALEPSVAFPSESKETTGQAGTVEFQDVSFRYGRTSRAVIEHVTFSAQKGQTVAFIGSTGSGKSTLVNLIP
RFYDATEGKILVDGVNVKGYSHQELNNKVGYIPQKAVLFSGTIRSNMEFGESSQGKLEDEAIWKALELAQAKEFVATKEK
DLDTEVAQGGSNFSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRILRQALKEELADTTKLIVAQRISTIMDADLI
LVLDQGKVVGQGTHKELLATNEVYQEIAYSQLSKEELEHA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=909522 SM123_RS02655 WP_320909776.1 581264..583066(+) (rcrP) [Streptococcus lingualis strain S5]
ATGATCAATATATTTCGGCGCTTAACCGCCAAAGAATGGGGCGTGATTGCCCTTAGTACGGTCTTTATCTGTCTGGCAGT
TTGGATGGATTTAAAGACCCCGGAATACTTGTCCGATATTACGACCCTCTTAGCTAAGGAGGGGACCAAGGTTTCTGATA
TCATGGAGCCAGGGAGTAAGATGTTGCTCTTCTCTTTTGGAAGCTTTTTGATGGCAGTTCTTGTGGGCTTTTTGGCTTCA
CGAGTCGCTGCCAGCTTTACGACGCGGCTTCGAGGAGAGATTTTCCACCAGGTGATGGATTACTCTGATGCAGAGATCAA
GAAATTCTCCGTTCCCTCTCTCTTGACTCGGACGACCAATGATTTGACCCAGTTACAAATCATGATTGTCATGGGGATGC
AGGTCGTGACGCGTGGGCCTATTATGGCGATTTGGGCCTTGACCAAGATTTGGGGCAAGAGCAGTGCCTGGACAACTTCT
GTTGGGATTGCGGTCTTGATGGTCTTGATTCTGCTTTCTGTTCTGGTTCTGATTGCCTTTCCACGCCAGCAAAAGGTTCA
AGGTTTGACCGATGCCTTGAATGCGACGACACGGGAGAGTTTGACTGGGGTGCGGGTCGTTCGCGCCTACAATGCGGAAG
CGTATCAAAATGAGAAATTCCAGGCTGAAAACAAGGGCTTAACCCGTCTAAATCTCTTTGTTTATCGTTTGATGTCTCTG
ATGAACCCTGTCATGACAGTGGTATCAAGTGGCTTGACCCTTGCTATCTACTGGATTGGGGCGCACTTGATCAATGATAT
CGCCATGCCAAAAGATCCTACAAAGATCTTCACCAGTCCTGCATTAGCGGATCGGACCAAGGTCTTCTCAGATATGATCA
CCTTTTCTTCTTACGCCATGCAGGTTGTCGTTGGCTTTATGATGATGGTGGCCATCTTGATTATTCTTCCTCGTGCACTA
GTATCCGCAAAACGGATTAATCAGGTCTTGGCTCTTGAACCGTCTGTAGCCTTCCCAAGTGAGTCAAAAGAAACAACAGG
CCAAGCAGGTACAGTAGAATTTCAAGATGTTTCCTTCCGCTATGGACGGACTTCCCGTGCGGTGATTGAACATGTGACCT
TCTCAGCTCAGAAAGGACAAACTGTTGCCTTCATCGGATCAACTGGTTCTGGTAAATCCACTTTGGTCAATTTAATCCCA
CGTTTTTACGATGCGACAGAAGGAAAGATCTTAGTGGATGGCGTCAATGTCAAGGGCTATAGCCACCAAGAATTGAACAA
TAAAGTCGGCTACATTCCCCAAAAAGCAGTGCTCTTCAGTGGCACTATTCGCTCCAATATGGAATTTGGAGAAAGTAGTC
AAGGAAAATTAGAGGATGAAGCTATTTGGAAAGCTCTTGAATTGGCCCAAGCCAAAGAGTTTGTTGCCACAAAAGAGAAG
GACTTGGATACAGAAGTAGCGCAAGGAGGAAGCAACTTCTCTGGAGGACAACGTCAACGTTTGGCCATTGCGCGTGCCCT
TGCACGCAAGCCCGAGATCCTCATCTTTGATGATTCCTTCTCAGCCCTGGATTATAAAACGGATCGTATCTTGCGACAAG
CCCTAAAAGAAGAGTTGGCAGATACGACCAAATTGATCGTTGCCCAACGGATTTCGACCATTATGGATGCGGATTTGATT
TTGGTCCTGGATCAAGGGAAGGTCGTCGGTCAAGGTACCCACAAGGAATTGCTTGCGACCAATGAAGTCTATCAAGAAAT
TGCCTATTCACAATTGTCTAAGGAGGAGTTGGAACATGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-266)

ABC transporter (ABC_tran)

(370-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

78

100

0.78