Detailed information NTG0909520

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SM123_RS01605
• Genome accession: NZ_CP139419
• Coordinates: 318188..319522 (+)
• Length: 444 a.a.
• NCBI ID: WP_320909990.1
• Uniprot ID: -
• Organism: Streptococcus lingualis strain S5
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 313188..324522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM123_RS01590 (SM123_01590)	-	313457..316816 (-)	3360	WP_320909671.1	SpaA isopeptide-forming pilin-related protein	-
SM123_RS01595 (SM123_01595)	-	317244..317690 (+)	447	WP_320909989.1	dUTP diphosphatase	-
SM123_RS01600 (SM123_01600)	-	317700..318167 (+)	468	WP_320909672.1	isochorismatase family protein	-
SM123_RS01605 (SM123_01605)	radA	318188..319522 (+)	1335	WP_320909990.1	DNA repair protein RadA	Machinery gene
SM123_RS01610 (SM123_01610)	-	319809..320303 (+)	495	WP_320909673.1	carbonic anhydrase	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 48359.56 Da
• Isoelectric Point: 6.0889

>NTDB_id=909520 SM123_RS01605 WP_320909990.1 318188..319522(+) (radA) [Streptococcus lingualis strain S5]
MCQNCAYNSPKYLGRCPNCGSWSSFVEEVEVTEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVERIQPNFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEVRRVNRIEQR
INEAAKLGFTKIYVPKNSLTGITTPSGIQVIGVTTLSEVLKKVF

Nucleotide

• Length: 1335 bp

>NTDB_id=909520 SM123_RS01605 WP_320909990.1 318188..319522(+) (radA) [Streptococcus lingualis strain S5]
ATTTGTCAAAATTGTGCCTACAATTCACCCAAGTATCTAGGCCGCTGTCCAAACTGTGGATCTTGGTCTTCTTTTGTCGA
GGAAGTTGAGGTCACCGAGGTTAAGAATGCGCGTGTGTCCTTGACGGGTGAAAAGACCAAACCCATGAAATTAGCGGACG
TGACCTCTATCAATGTTCACCGGACCAAGACGGAGATGGAGGAGTTTAACCGCGTCCTTGGAGGCGGAGTGGTACCAGGA
AGTCTCGTCCTCATCGGTGGGGATCCTGGGATTGGGAAATCGACCCTTCTCCTTCAAGTGTCGACCCAGCTATCTCAAGT
GGGAACGGTTCTCTATGTCAGTGGAGAGGAGTCAGCCCAGCAGATTAAGTTACGAGCAGAGCGCTTGGGTGATATCGATA
GCGAGTTTTACCTCTATGCTGAGACCAATATGCAGAGCGTGCGAGCAGAAGTGGAGCGCATCCAGCCTAACTTTCTCATC
ATCGACTCTATCCAGACTATTATGTCTCCTGAGATTTCAGGAGTTCAAGGGTCAGTTTCTCAAGTACGGGAGGTAACCGC
TGAGCTTATGCAGCTGGCCAAAACCAACAACATTGCCATCTTTATCGTCGGCCATGTGACCAAGGAAGGAACCTTGGCGG
GCCCGCGTATGTTGGAGCACATGGTGGATACGGTCCTCTACTTTGAAGGAGAACGTCACCACACCTTCCGGATTCTGAGG
GCAGTAAAAAACCGCTTTGGTTCGACCAATGAGATTGGGATCTTTGAGATGCAATCAGGTGGCTTGGTTGAAGTTCTCAA
TCCGAGTCAAGTTTTCCTAGAAGAGCGTTTAGACGGTGCGACTGGTTCGTCCATCGTAGTGACCATGGAAGGGACGCGTC
CAATTCTTGCTGAAGTACAGGCCTTGGTGACTCCGACTATGTTTGGGAATGCCAAGCGGACGACAACGGGGCTTGATTTT
AACCGAGCTAGTCTCATCATGGCAGTGCTAGAAAAACGAGCGGGTTTGCTCCTTCAAAATCAGGATGCCTACCTCAAGTC
TGCAGGTGGTGTCAAGTTGGATGAGCCGGCTATCGACCTAGCCGTAGCCGTAGCCATTGCTTCCAGCTACAAGGACAAGC
CAACCAACCCGCAAGAGTGTTTCGTTGGAGAGTTGGGCTTGACCGGAGAAGTCCGCCGAGTCAATCGGATCGAACAACGG
ATCAATGAAGCGGCTAAGCTTGGTTTTACCAAGATTTATGTTCCGAAAAATTCTCTGACTGGGATCACGACGCCATCGGG
GATCCAGGTCATCGGTGTGACGACACTAAGTGAAGTCTTAAAAAAAGTATTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (57-210)

• Subunit ChlI of Mg-chelatase (ChlI) (352-417)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (2-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	97.297	100	0.973
radA	Streptococcus pneumoniae D39	97.297	100	0.973
radA	Streptococcus pneumoniae R6	97.297	100	0.973
radA	Streptococcus pneumoniae TIGR4	97.297	100	0.973
radA	Streptococcus mitis SK321	97.297	100	0.973
radA	Streptococcus mitis NCTC 12261	97.072	100	0.971
radA	Bacillus subtilis subsp. subtilis str. 168	63.146	100	0.633