Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   SM121_RS09575 Genome accession   NZ_CP139418
Coordinates   1948058..1948789 (-) Length   243 a.a.
NCBI ID   WP_223345670.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1943058..1953789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS09540 (SM121_09540) - 1943172..1943471 (-) 300 WP_003003969.1 YlxQ-related RNA-binding protein -
  SM121_RS09545 (SM121_09545) rnpM 1943464..1943760 (-) 297 WP_003003906.1 RNase P modulator RnpM -
  SM121_RS09550 (SM121_09550) nusA 1943775..1944917 (-) 1143 WP_320910909.1 transcription termination factor NusA -
  SM121_RS09555 (SM121_09555) rimP 1944962..1945441 (-) 480 WP_070449014.1 ribosome maturation factor RimP -
  SM121_RS09560 (SM121_09560) trmB 1945539..1946174 (-) 636 WP_023920251.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SM121_RS09565 (SM121_09565) ccrZ 1946171..1946965 (-) 795 WP_023920250.1 cell cycle regulator CcrZ -
  SM121_RS09570 (SM121_09570) - 1947006..1948061 (-) 1056 WP_272108659.1 ABC transporter permease -
  SM121_RS09575 (SM121_09575) pptA 1948058..1948789 (-) 732 WP_223345670.1 ABC transporter ATP-binding protein Regulator
  SM121_RS09580 (SM121_09580) - 1948857..1949270 (+) 414 WP_129299731.1 HIT family protein -
  SM121_RS09585 (SM121_09585) - 1949283..1949573 (+) 291 WP_003012641.1 hypothetical protein -
  SM121_RS09590 (SM121_09590) brpA 1949595..1950788 (-) 1194 WP_155127756.1 biofilm formation/cell division transcriptional regulator BrpA -
  SM121_RS09595 (SM121_09595) - 1950802..1951332 (-) 531 WP_003012634.1 GNAT family N-acetyltransferase -
  SM121_RS09600 (SM121_09600) tsaE 1951325..1951780 (-) 456 WP_003012535.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SM121_RS09605 (SM121_09605) - 1951959..1953380 (-) 1422 WP_070464909.1 NCS2 family permease -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 27065.35 Da        Isoelectric Point: 4.4679

>NTDB_id=909513 SM121_RS09575 WP_223345670.1 1948058..1948789(-) (pptA) [Streptococcus dentalis strain S1]
MLEINKLTGGYVNIPVLKEVSFSVPDGQLIGLIGLNGAGKSTTINEIIGLLHPYAGEVRIDGLSLPEAPTDYRKKIGYIP
ETPSLYEELTLREHIETVAMAYDLDMDQVMVRVQPLLERFRLAEKLDWFPTQFSKGMKQKVMIICAYAVDPSLYIVDEPF
LGLDPVAIADLIQLLADEKAKGKSILMSTHVLDSAEKMCDGFVILHKGQIRAKGTLDELRSTFEDEKASLNDIYMTLTEE
ETA

Nucleotide


Download         Length: 732 bp        

>NTDB_id=909513 SM121_RS09575 WP_223345670.1 1948058..1948789(-) (pptA) [Streptococcus dentalis strain S1]
ATGTTAGAAATCAACAAGTTGACAGGGGGCTATGTCAATATCCCTGTCCTGAAAGAGGTGAGTTTTTCAGTTCCGGATGG
CCAACTGATTGGTTTGATTGGACTAAATGGAGCTGGGAAGTCAACCACGATTAATGAAATTATTGGTCTCCTGCATCCTT
ATGCTGGGGAAGTACGGATTGACGGCTTGAGTCTTCCAGAAGCTCCAACTGACTATCGTAAAAAAATCGGCTATATTCCA
GAAACTCCTAGCCTATATGAAGAATTAACCTTGAGAGAGCATATCGAGACCGTAGCTATGGCCTATGATTTAGACATGGA
TCAGGTCATGGTGCGCGTCCAGCCTTTGTTGGAACGATTTCGTTTGGCTGAAAAATTAGATTGGTTCCCGACCCAGTTTT
CAAAAGGGATGAAGCAAAAGGTCATGATTATTTGTGCCTATGCAGTGGATCCAAGTCTTTATATTGTCGATGAACCCTTT
TTGGGATTGGATCCTGTTGCGATTGCAGATTTGATTCAGTTATTGGCAGATGAGAAAGCAAAAGGAAAATCGATTTTGAT
GAGTACCCACGTTCTGGATTCGGCTGAAAAGATGTGTGATGGTTTTGTAATCCTCCATAAGGGGCAGATTCGAGCAAAAG
GGACCTTAGATGAGTTGCGTTCAACTTTTGAGGATGAGAAAGCAAGTCTAAATGATATCTACATGACCTTGACAGAAGAG
GAAACAGCATGA

Domains


Predicted by InterproScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.104

99.177

0.745

  pptA Streptococcus thermophilus LMD-9

75.104

99.177

0.745