Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   SM121_RS09035 Genome accession   NZ_CP139418
Coordinates   1850545..1851627 (-) Length   360 a.a.
NCBI ID   WP_049517992.1    Uniprot ID   -
Organism   Streptococcus dentalis strain S1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1845545..1856627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM121_RS09010 (SM121_09010) - 1846764..1847498 (-) 735 WP_003011571.1 response regulator transcription factor -
  SM121_RS09015 (SM121_09015) msrB 1847557..1848678 (-) 1122 WP_004219819.1 peptide-methionine (R)-S-oxide reductase MsrB -
  SM121_RS09020 (SM121_09020) - 1848690..1849250 (-) 561 WP_320911328.1 redoxin family protein -
  SM121_RS09025 (SM121_09025) - 1849310..1849645 (-) 336 WP_003012061.1 hypothetical protein -
  SM121_RS09030 (SM121_09030) ccdA2 1849672..1850382 (-) 711 WP_003012254.1 thiol-disulfide oxidoreductase-associated membrane protein CcdA2 -
  SM121_RS09035 (SM121_09035) sepM 1850545..1851627 (-) 1083 WP_049517992.1 SepM family pheromone-processing serine protease Regulator
  SM121_RS09040 (SM121_09040) coaD 1851611..1852099 (-) 489 WP_155125470.1 pantetheine-phosphate adenylyltransferase -
  SM121_RS09045 (SM121_09045) rsmD 1852089..1852703 (-) 615 WP_371605830.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SM121_RS09050 (SM121_09050) asnA 1852725..1853717 (-) 993 WP_003005888.1 aspartate--ammonia ligase -
  SM121_RS09055 (SM121_09055) - 1853877..1854554 (+) 678 WP_004219840.1 XRE family transcriptional regulator -
  SM121_RS09060 (SM121_09060) - 1854557..1855969 (+) 1413 WP_320910884.1 Y-family DNA polymerase -
  SM121_RS09065 (SM121_09065) - 1855966..1856337 (+) 372 WP_155125466.1 hypothetical protein -

Sequence


Protein


Download         Length: 360 a.a.        Molecular weight: 39108.81 Da        Isoelectric Point: 9.4283

>NTDB_id=909508 SM121_RS09035 WP_049517992.1 1850545..1851627(-) (sepM) [Streptococcus dentalis strain S1]
MTQANKPSLTTKKKKGRLKEYRWPIAGVLFLLLLLAAFVIRLPYYIEMPGTAEDIRSVMTVDGKMDTKSGSYDFVTVAVK
EATPADLIYAWATPFTDIYSAKDMTGGSSSQEFTRINQFYMETSQNMAIYQGLKTAGKETQMDFLGVYVMQVADDSTFKG
ILNIADTVTGVNGKTFKSSKELIDYVGSQKIGDPVSVTYIEDGQTKTADGKIIKLSNGKNGIGISLIDRTEAKGDVPVQF
ATQGIGGPSAGMMFSLAIYTQVADPDLRQGRHIAGTGTINQDGTVGDIGGIDKKVVAADKEGAEIFFAPNNPVSKEEKKA
NPKAKSNYETAKEAAKQIHSKMKIVPVKTLQDAIDYLKKK

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=909508 SM121_RS09035 WP_049517992.1 1850545..1851627(-) (sepM) [Streptococcus dentalis strain S1]
ATGACACAAGCGAATAAACCAAGCTTGACCACTAAAAAGAAAAAGGGACGGTTGAAAGAATACCGATGGCCGATTGCAGG
CGTTCTTTTCTTGCTCCTTTTGCTAGCTGCTTTTGTGATTCGCCTTCCCTATTATATTGAGATGCCAGGAACGGCAGAAG
ATATTCGATCCGTCATGACAGTAGATGGAAAAATGGATACCAAGTCAGGGTCTTATGACTTTGTAACCGTGGCAGTGAAA
GAAGCGACTCCGGCTGATTTGATCTATGCTTGGGCGACACCTTTTACAGATATCTACTCTGCAAAGGATATGACAGGTGG
TAGTTCGAGCCAAGAATTTACGCGGATTAACCAATTCTATATGGAAACCTCGCAAAATATGGCCATCTACCAAGGATTGA
AGACAGCTGGGAAAGAAACCCAGATGGACTTTCTAGGTGTTTATGTCATGCAAGTGGCAGATGATTCGACCTTTAAGGGA
ATCTTGAACATTGCAGATACCGTCACAGGTGTGAATGGCAAGACCTTTAAGAGTTCCAAAGAATTGATTGACTATGTTGG
TTCTCAAAAAATTGGCGATCCCGTTTCAGTGACCTATATTGAGGATGGACAAACCAAGACAGCAGATGGAAAGATCATCA
AATTGTCCAACGGGAAAAACGGAATTGGGATTAGCTTGATCGACCGGACTGAAGCCAAAGGCGATGTTCCTGTCCAGTTT
GCGACCCAAGGGATTGGTGGACCAAGTGCCGGTATGATGTTTAGCCTAGCCATCTACACCCAAGTGGCTGATCCAGATCT
TCGTCAGGGACGCCATATTGCGGGGACAGGAACCATTAACCAAGATGGAACGGTTGGCGATATCGGTGGGATTGACAAGA
AAGTCGTTGCAGCCGATAAAGAAGGAGCAGAAATTTTCTTTGCCCCTAATAATCCAGTTTCCAAAGAAGAAAAGAAAGCC
AATCCCAAGGCCAAATCAAACTATGAAACAGCGAAAGAAGCCGCGAAACAAATTCATTCGAAGATGAAAATCGTTCCCGT
CAAAACCCTTCAAGATGCTATTGATTATTTGAAAAAGAAGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

60.704

94.722

0.575