Detailed information NTG0909482

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: SM121_RS03000
• Genome accession: NZ_CP139418
• Coordinates: 601812..603170 (+)
• Length: 452 a.a.
• NCBI ID: WP_080563357.1
• Uniprot ID: -
• Organism: Streptococcus dentalis strain S1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 596812..608170

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM121_RS02985 (SM121_02985)	-	598122..600425 (-)	2304	WP_320911122.1	Ig-like domain-containing protein	-
SM121_RS02990 (SM121_02990)	-	600835..601281 (+)	447	WP_009731797.1	dUTP diphosphatase	-
SM121_RS02995 (SM121_02995)	-	601241..601798 (+)	558	WP_320911123.1	histidine phosphatase family protein	-
SM121_RS03000 (SM121_03000)	radA	601812..603170 (+)	1359	WP_080563357.1	DNA repair protein RadA	Machinery gene
SM121_RS03005 (SM121_03005)	-	603308..603802 (+)	495	WP_003012833.1	carbonic anhydrase	-

Sequence

Protein

• Length: 452 a.a.
• Molecular weight: 49233.66 Da
• Isoelectric Point: 6.9518

>NTDB_id=909482 SM121_RS03000 WP_080563357.1 601812..603170(+) (radA) [Streptococcus dentalis strain S1]
MAKKKTTFICQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLADVTSINVHRTKTEMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRAEVE
RIQPNFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSSGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAK
RTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEVR
RVNRIEQRINEAAKLGFTKIYVPKNSLTGITTPSGIQVVGVSTLAEVLKKVF

Nucleotide

• Length: 1359 bp

>NTDB_id=909482 SM121_RS03000 WP_080563357.1 601812..603170(+) (radA) [Streptococcus dentalis strain S1]
ATCGCAAAGAAAAAAACGACATTTATTTGTCAAAATTGTGCCTACAATTCACCCAAATACCTAGGGCGCTGTCCTAACTG
TGGTTCTTGGTCTTCCTTTGTGGAGGAAGTCGAAGTTGCAGAAGTCAAAAATGCGCGTGTGTCCTTGACAGGTGAAAAGA
CCAAACCCATGAAATTGGCGGACGTGACCTCTATCAATGTTCACCGGACCAAGACGGAGATGGAAGAATTCAACCGCGTC
CTTGGAGGTGGTGTCGTCCCAGGAAGTCTGGTCCTCATTGGGGGAGATCCTGGGATTGGGAAATCGACCCTGCTCCTTCA
AGTATCAACCCAGTTATCCCAAGTGGGAACAGTTCTTTACGTTAGTGGAGAGGAGTCGGCCCAGCAGATCAAACTTCGGG
CAGAGCGCTTGGGAGATATCGACAGTGAGTTTTATCTCTATGCTGAGACTAATATGCAGAGCGTGCGAGCAGAAGTGGAG
CGCATCCAGCCTAACTTCCTCATCATTGACTCGATCCAGACCATTATGTCTCCTGAGATTTCAGGGGTACAAGGATCGGT
TTCTCAGGTGCGTGAGGTAACGGCTGAGCTCATGCAACTGGCCAAGACCAATAACATCGCCATCTTTATCGTCGGTCATG
TGACCAAGGAAGGAACCTTGGCGGGTCCTCGGATGCTGGAACACATGGTGGATACGGTGCTCTACTTTGAGGGCGAACGC
CATCATACCTTCCGGATTCTAAGAGCAGTCAAGAACCGCTTTGGCTCGACCAATGAGATCGGGATCTTCGAGATGCAGTC
GAGTGGCTTGGTTGAGGTGCTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTAGACGGTGCCACTGGTTCGTCAATCG
TAGTGACCATGGAGGGGACTCGTCCGATTCTTGCAGAAGTACAGGCCTTGGTGACACCAACTATGTTTGGAAATGCCAAG
CGGACGACGACAGGTCTTGATTTTAATCGGGCTAGTTTGATTATGGCTGTTTTGGAGAAACGTGCAGGTTTGCTCCTCCA
AAATCAGGATGCCTACCTCAAATCAGCAGGTGGTGTCAAATTGGATGAGCCTGCCATTGACCTGGCAGTAGCCGTAGCCA
TTGCCTCGAGCTACAAGGACAAGCCAACCAACCCGCAGGAATGTTTCGTCGGAGAGTTGGGCTTGACAGGAGAAGTTCGC
CGGGTCAACCGGATCGAGCAACGAATCAATGAAGCTGCTAAACTTGGTTTTACCAAGATTTATGTTCCGAAAAATTCTCT
GACGGGGATCACGACACCATCAGGAATCCAGGTGGTCGGTGTGAGTACACTAGCTGAAGTCTTGAAGAAAGTATTTTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (360-425)

• AAA domain (AAA_25) (65-218)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae Rx1	96.681	100	0.967
radA	Streptococcus pneumoniae D39	96.681	100	0.967
radA	Streptococcus pneumoniae R6	96.681	100	0.967
radA	Streptococcus pneumoniae TIGR4	96.681	100	0.967
radA	Streptococcus mitis SK321	96.681	100	0.967
radA	Streptococcus mitis NCTC 12261	96.46	100	0.965
radA	Bacillus subtilis subsp. subtilis str. 168	63.355	100	0.635