Detailed information NTG0909448

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABS746_RS07135
• Genome accession: NZ_CP158441
• Coordinates: 1188386..1189378 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S115
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1183386..1194378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS746_RS07105 (ABS746_07090)	ispD	1183447..1184157 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABS746_RS07110 (ABS746_07095)	ispF	1184157..1184636 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABS746_RS07115 (ABS746_07100)	truD	1184633..1185682 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABS746_RS07120 (ABS746_07105)	surE	1185663..1186424 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
ABS746_RS07125 (ABS746_07110)	pcm	1186418..1187044 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABS746_RS07130 (ABS746_07115)	nlpD	1187229..1188323 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABS746_RS07135 (ABS746_07120)	rpoS	1188386..1189378 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABS746_RS07140 (ABS746_07125)	ygbN	1189472..1190836 (-)	1365	WP_000104456.1	GntP family transporter	-
ABS746_RS07145 (ABS746_07130)	ygbM	1190925..1191701 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ABS746_RS07150 (ABS746_07135)	ygbL	1191706..1192344 (-)	639	WP_001278994.1	aldolase	-
ABS746_RS07155 (ABS746_07140)	otnK	1192341..1193603 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=909448 ABS746_RS07135 WP_000081550.1 1188386..1189378(+) (rpoS) [Escherichia coli strain S115]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=909448 ABS746_RS07135 WP_000081550.1 1188386..1189378(+) (rpoS) [Escherichia coli strain S115]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715