Detailed information NTG0909362

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABS745_RS07570
• Genome accession: NZ_CP158435
• Coordinates: 1169535..1170527 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain ATCC BAA-2469
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1164535..1175527

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABS745_RS07540 (ABS745_07515)	ispD	1164596..1165306 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABS745_RS07545 (ABS745_07520)	ispF	1165306..1165785 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABS745_RS07550 (ABS745_07525)	truD	1165782..1166831 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
ABS745_RS07555 (ABS745_07530)	surE	1166812..1167573 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABS745_RS07560 (ABS745_07535)	pcm	1167567..1168193 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABS745_RS07565 (ABS745_07540)	nlpD	1168378..1169472 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
ABS745_RS07570 (ABS745_07545)	rpoS	1169535..1170527 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABS745_RS07575 (ABS745_07550)	-	1170698..1171249 (-)	552	WP_001179444.1	flavodoxin family protein	-
ABS745_RS07580 (ABS745_07555)	-	1171474..1172517 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
ABS745_RS07585 (ABS745_07560)	ygbN	1172660..1174024 (-)	1365	WP_000104433.1	GntP family transporter	-
ABS745_RS07590 (ABS745_07565)	ygbM	1174113..1174889 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=909362 ABS745_RS07570 WP_000081550.1 1169535..1170527(+) (rpoS) [Escherichia coli strain ATCC BAA-2469]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=909362 ABS745_RS07570 WP_000081550.1 1169535..1170527(+) (rpoS) [Escherichia coli strain ATCC BAA-2469]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715