Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NCY62_RS17000 Genome accession   NZ_CP139356
Coordinates   3547510..3549078 (+) Length   522 a.a.
NCBI ID   WP_250733836.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3542510..3554078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS16980 (NCY62_17045) hom 3543001..3544302 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  NCY62_RS16985 (NCY62_17050) thrC 3544357..3545496 (+) 1140 WP_002048893.1 threonine synthase -
  NCY62_RS16990 (NCY62_17055) pbpG 3545605..3546651 (-) 1047 WP_005065720.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NCY62_RS16995 (NCY62_17060) gacA 3546864..3547499 (+) 636 WP_002121174.1 response regulator -
  NCY62_RS17000 (NCY62_17065) pilS 3547510..3549078 (+) 1569 WP_250733836.1 sensor histidine kinase Regulator
  NCY62_RS17005 (NCY62_17070) pilR 3549102..3550514 (+) 1413 WP_250733834.1 sigma-54-dependent transcriptional regulator Regulator
  NCY62_RS17010 (NCY62_17075) ctpA 3550518..3551702 (-) 1185 WP_250733832.1 S41 family peptidase -
  NCY62_RS17015 (NCY62_17080) gpmI 3551718..3553265 (-) 1548 WP_017400161.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59065.63 Da        Isoelectric Point: 6.4276

>NTDB_id=909094 NCY62_RS17000 WP_250733836.1 3547510..3549078(+) (pilS) [Acinetobacter pittii strain A45P]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPTLYSYTLLGYSLLSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSAAEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HTIQLKSSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=909094 NCY62_RS17000 WP_250733836.1 3547510..3549078(+) (pilS) [Acinetobacter pittii strain A45P]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCACTTTATATTCTT
ATACACTACTCGGCTATTCGCTCTTAAGCCTTCTTCAACTTTTATGCTTCAAGTTTATTGCCACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATATGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTTCAACTCAG
CTTGCTATATGTTATTGCCATATTTACTTCGGCCATTTTACTTAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TCATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTATTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGTTTTAAACTACTTGAAGCACTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTCC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCACCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAATTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAGTCCCGACTGTCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTGGTGCCGCAACAAGCATTAACACTAC
TCATCTTACAAGATGCACAACAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCACATGAGATTCGTAATCCTCTTGCAGCCATTGTTCAAGCAAATGAATTACTCAAAGATAGTGCCGCGGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGATACGTTAGGACTTGCCCGCA
GTGAAAGAACGTACCCAATCCAGATCGAATTAAACGACTTCATAAAAACGTTATTAGATGAAGATTTATCTGATGTTAAA
CATACGATCCAGCTTAAAAGTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTCCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCCGACTCTCCCTATGTTCTGATCAATATCCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.444

100

0.944