Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NCY62_RS16845 Genome accession   NZ_CP139356
Coordinates   3516494..3516820 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain A45P     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3511494..3521820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS16825 (NCY62_16885) - 3511595..3512221 (-) 627 WP_250733851.1 FHA domain-containing protein -
  NCY62_RS16830 (NCY62_16890) gspD 3512262..3514538 (-) 2277 WP_250733849.1 type II secretion system secretin GspD -
  NCY62_RS16835 (NCY62_16895) - 3514580..3515416 (-) 837 WP_218660376.1 type II secretion system protein N -
  NCY62_RS16840 (NCY62_16900) gspN 3515416..3516159 (-) 744 WP_250733847.1 type II secretion system protein N -
  NCY62_RS16845 (NCY62_16905) hns 3516494..3516820 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  NCY62_RS16850 (NCY62_16910) - 3517016..3517456 (-) 441 WP_017385884.1 acyl-CoA thioesterase -
  NCY62_RS16855 (NCY62_16915) - 3517464..3518657 (-) 1194 WP_017385883.1 membrane protein -
  NCY62_RS16860 (NCY62_16920) - 3518667..3519509 (-) 843 WP_250733845.1 hypothetical protein -
  NCY62_RS16865 (NCY62_16925) hemD 3519518..3520285 (-) 768 WP_250733844.1 uroporphyrinogen-III synthase -
  NCY62_RS16870 (NCY62_16930) hemC 3520289..3521206 (-) 918 WP_068564789.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=909092 NCY62_RS16845 WP_000801427.1 3516494..3516820(-) (hns) [Acinetobacter pittii strain A45P]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=909092 NCY62_RS16845 WP_000801427.1 3516494..3516820(-) (hns) [Acinetobacter pittii strain A45P]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1