Detailed information NTG0090908

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK09_RS21900
• Genome accession: NZ_AP027844
• Coordinates: 4546261..4547286 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 2017.18.02CC
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4541261..4552286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK09_RS21890 (VEE62_42020)	rpmE	4543492..4543704 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
AABK09_RS21895 (VEE62_42030)	priA	4543907..4546105 (+)	2199	WP_001315935.1	primosomal protein N'	Machinery gene
AABK09_RS21900 (VEE62_42040)	cytR	4546261..4547286 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK09_RS21905 (VEE62_42050)	ftsN	4547378..4548337 (+)	960	WP_000068834.1	cell division protein FtsN	-
AABK09_RS21910 (VEE62_42060)	hslV	4548430..4548960 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK09_RS21915 (VEE62_42070)	hslU	4548970..4550301 (+)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABK09_RS21920 (VEE62_42080)	menA	4550368..4551294 (+)	927	WP_001307494.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK09_RS21925 (VEE62_42090)	rraA	4551387..4551872 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK09_RS21930 (VEE62_42100)	zapB	4551957..4552202 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=90908 AABK09_RS21900 WP_000644904.1 4546261..4547286(+) (cytR) [Escherichia coli strain 2017.18.02CC]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=90908 AABK09_RS21900 WP_000644904.1 4546261..4547286(+) (cytR) [Escherichia coli strain 2017.18.02CC]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTATCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628