Detailed information NTG0909078

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRP08_RS18225
• Genome accession: NZ_CP158353
• Coordinates: 3718243..3719235 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 914033
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3713243..3724235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP08_RS18205 (ABRP08_18200)	otnK	3714018..3715280 (+)	1263	WP_072649794.1	3-oxo-tetronate kinase	-
ABRP08_RS18210 (ABRP08_18205)	ygbL	3715277..3715915 (+)	639	WP_001278994.1	aldolase	-
ABRP08_RS18215 (ABRP08_18210)	ygbM	3715920..3716696 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRP08_RS18220 (ABRP08_18215)	ygbN	3716785..3718149 (+)	1365	WP_000104441.1	GntP family transporter	-
ABRP08_RS18225 (ABRP08_18220)	rpoS	3718243..3719235 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRP08_RS18230 (ABRP08_18225)	nlpD	3719298..3720392 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRP08_RS18235 (ABRP08_18230)	pcm	3720577..3721203 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRP08_RS18240 (ABRP08_18235)	surE	3721197..3721958 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRP08_RS18245 (ABRP08_18240)	truD	3721939..3722988 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRP08_RS18250 (ABRP08_18245)	ispF	3722985..3723464 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRP08_RS18255 (ABRP08_18250)	ispD	3723464..3724174 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=909078 ABRP08_RS18225 WP_000081550.1 3718243..3719235(-) (rpoS) [Escherichia coli strain 914033]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=909078 ABRP08_RS18225 WP_000081550.1 3718243..3719235(-) (rpoS) [Escherichia coli strain 914033]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715