Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NCY62_RS02530 Genome accession   NZ_CP139356
Coordinates   520287..521171 (+) Length   294 a.a.
NCBI ID   WP_250733760.1    Uniprot ID   -
Organism   Acinetobacter pittii strain A45P     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 515287..526171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY62_RS02505 (NCY62_02515) - 515600..516847 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  NCY62_RS02510 (NCY62_02520) wrbA 517209..517811 (+) 603 WP_081318513.1 NAD(P)H:quinone oxidoreductase -
  NCY62_RS02515 (NCY62_02525) xpt 517863..518438 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  NCY62_RS02520 (NCY62_02530) - 518511..519224 (-) 714 WP_014207724.1 DUF3108 domain-containing protein -
  NCY62_RS02525 (NCY62_02535) - 519383..520054 (-) 672 WP_002119526.1 hypothetical protein -
  NCY62_RS02530 (NCY62_02540) tonB2 520287..521171 (+) 885 WP_250733760.1 energy transducer TonB Machinery gene
  NCY62_RS02535 (NCY62_02545) ybeY 521211..521699 (-) 489 WP_126646138.1 rRNA maturation RNase YbeY -
  NCY62_RS02540 (NCY62_02550) phoL 521709..522797 (-) 1089 WP_002119513.1 PhoH family protein -
  NCY62_RS02545 (NCY62_02555) miaB 522835..524286 (-) 1452 WP_068615284.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33652.20 Da        Isoelectric Point: 7.2966

>NTDB_id=909069 NCY62_RS02530 WP_250733760.1 520287..521171(+) (tonB2) [Acinetobacter pittii strain A45P]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGDTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=909069 NCY62_RS02530 WP_250733760.1 520287..521171(+) (tonB2) [Acinetobacter pittii strain A45P]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAGATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTACGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.755

100

0.878