Detailed information NTG0908958

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRO98_RS05245
• Genome accession: NZ_CP158351
• Coordinates: 1091251..1092243 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 146
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086251..1097243

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRO98_RS05215 (ABRO98_05215)	ispD	1086312..1087022 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRO98_RS05220 (ABRO98_05220)	ispF	1087022..1087501 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRO98_RS05225 (ABRO98_05225)	truD	1087498..1088547 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRO98_RS05230 (ABRO98_05230)	surE	1088528..1089289 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRO98_RS05235 (ABRO98_05235)	pcm	1089283..1089909 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRO98_RS05240 (ABRO98_05240)	nlpD	1090094..1091188 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRO98_RS05245 (ABRO98_05245)	rpoS	1091251..1092243 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRO98_RS05250 (ABRO98_05250)	ygbN	1092337..1093701 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRO98_RS05255 (ABRO98_05255)	ygbM	1093790..1094566 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRO98_RS05260 (ABRO98_05260)	ygbL	1094571..1095209 (-)	639	WP_001278994.1	aldolase	-
ABRO98_RS05265 (ABRO98_05265)	otnK	1095206..1096468 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=908958 ABRO98_RS05245 WP_000081550.1 1091251..1092243(+) (rpoS) [Escherichia coli strain 146]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=908958 ABRO98_RS05245 WP_000081550.1 1091251..1092243(+) (rpoS) [Escherichia coli strain 146]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTAGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715