Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABRO99_RS14845 Genome accession   NZ_CP158348
Coordinates   3025053..3025682 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 23713     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3020053..3030682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABRO99_RS14830 (ABRO99_14820) helD 3020295..3022349 (-) 2055 WP_053263464.1 DNA helicase IV -
  ABRO99_RS14835 (ABRO99_14825) yccF 3022472..3022918 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABRO99_RS14840 (ABRO99_14830) yccS 3022928..3025090 (+) 2163 WP_000875061.1 YccS family putative transporter -
  ABRO99_RS14845 (ABRO99_14835) sxy/tfoX 3025053..3025682 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABRO99_RS14850 (ABRO99_14840) sulA 3025901..3026410 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABRO99_RS14855 (ABRO99_14845) ompA 3026767..3027807 (+) 1041 WP_000750416.1 porin OmpA -
  ABRO99_RS14860 (ABRO99_14850) matP 3027883..3028335 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABRO99_RS14865 (ABRO99_14855) ycbZ 3028521..3030281 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=908902 ABRO99_RS14845 WP_000839153.1 3025053..3025682(-) (sxy/tfoX) [Escherichia coli strain 23713]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=908902 ABRO99_RS14845 WP_000839153.1 3025053..3025682(-) (sxy/tfoX) [Escherichia coli strain 23713]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1