Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SOP92_RS06350 Genome accession   NZ_CP139335
Coordinates   1345870..1346496 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain ES13E     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340870..1351496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOP92_RS06330 (SOP92_06330) - 1341264..1343024 (-) 1761 WP_185791685.1 Lon protease family protein -
  SOP92_RS06335 (SOP92_06335) matP 1343211..1343663 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  SOP92_RS06340 (SOP92_06340) ompA 1343733..1344788 (-) 1056 WP_020884794.1 porin OmpA -
  SOP92_RS06345 (SOP92_06345) sulA 1345143..1345652 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  SOP92_RS06350 (SOP92_06350) sxy/tfoX 1345870..1346496 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  SOP92_RS06355 (SOP92_06355) yccS 1346453..1348615 (-) 2163 WP_020884791.1 YccS family putative transporter -
  SOP92_RS06360 (SOP92_06360) - 1348635..1349081 (-) 447 WP_025204535.1 YccF domain-containing protein -
  SOP92_RS06365 (SOP92_06365) helD 1349205..1351259 (+) 2055 WP_324279984.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=908898 SOP92_RS06350 WP_020884792.1 1345870..1346496(+) (sxy/tfoX) [Enterobacter ludwigii strain ES13E]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=908898 SOP92_RS06350 WP_020884792.1 1345870..1346496(+) (sxy/tfoX) [Enterobacter ludwigii strain ES13E]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGATGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTGATGAAACGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTAAAGATGCGGGCGAAAAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAGGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577