Detailed information NTG0908875

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRO99_RS05180
• Genome accession: NZ_CP158348
• Coordinates: 1077983..1078975 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 23713
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1072983..1083975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRO99_RS05150 (ABRO99_05150)	ispD	1073044..1073754 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRO99_RS05155 (ABRO99_05155)	ispF	1073754..1074233 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRO99_RS05160 (ABRO99_05160)	truD	1074230..1075279 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRO99_RS05165 (ABRO99_05165)	surE	1075260..1076021 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRO99_RS05170 (ABRO99_05170)	pcm	1076015..1076641 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRO99_RS05175 (ABRO99_05175)	nlpD	1076826..1077920 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRO99_RS05180 (ABRO99_05180)	rpoS	1077983..1078975 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRO99_RS05185 (ABRO99_05185)	ygbN	1079069..1080433 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRO99_RS05190 (ABRO99_05190)	ygbM	1080522..1081298 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRO99_RS05195 (ABRO99_05195)	ygbL	1081303..1081941 (-)	639	WP_001278994.1	aldolase	-
ABRO99_RS05200 (ABRO99_05200)	otnK	1081938..1083200 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=908875 ABRO99_RS05180 WP_000081550.1 1077983..1078975(+) (rpoS) [Escherichia coli strain 23713]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=908875 ABRO99_RS05180 WP_000081550.1 1077983..1078975(+) (rpoS) [Escherichia coli strain 23713]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715