Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SOI84_RS05475 Genome accession   NZ_CP139304
Coordinates   1071647..1073029 (-) Length   460 a.a.
NCBI ID   WP_320673565.1    Uniprot ID   -
Organism   Prochlorococcus sp. MIT 1341     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1066647..1078029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI84_RS05455 - 1067013..1067975 (-) 963 WP_320673561.1 DNA polymerase III subunit delta' -
  SOI84_RS05460 tmk 1067994..1068635 (-) 642 WP_320673562.1 dTMP kinase -
  SOI84_RS05465 - 1068632..1070956 (-) 2325 WP_320673563.1 cation-translocating P-type ATPase -
  SOI84_RS05470 - 1071105..1071626 (+) 522 WP_320673564.1 photosystem I assembly protein Ycf3 -
  SOI84_RS05475 radA 1071647..1073029 (-) 1383 WP_320673565.1 DNA repair protein RadA Machinery gene
  SOI84_RS05480 rpaB 1073130..1073876 (+) 747 WP_320673566.1 response regulator transcription factor RpaB -
  SOI84_RS05485 plsX 1073857..1075218 (+) 1362 WP_320675370.1 phosphate acyltransferase PlsX -
  SOI84_RS05490 - 1075259..1076278 (+) 1020 WP_320673567.1 beta-ketoacyl-ACP synthase III -
  SOI84_RS05495 fabD 1076305..1077201 (+) 897 WP_320673568.1 ACP S-malonyltransferase -
  SOI84_RS05500 - 1077277..1077882 (+) 606 WP_320673569.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49287.78 Da        Isoelectric Point: 7.3491

>NTDB_id=908869 SOI84_RS05475 WP_320673565.1 1071647..1073029(-) (radA) [Prochlorococcus sp. MIT 1341]
MVRTTSFFVCQSCGAQTKKFFGRCSSCGDWNSLIEQSAQSIDGRLRRNSVDFDQEPRSIKSMPMASLKENPLLRLGSGYQ
EFDRVLGSGLVPGSLVLLGGDPGIGKSTLLLQSATAMAISRSVLYVSAEESAQQVKLRWNRLKGAETNLHLLAETDLENV
LKELESLRPEVAIVDSIQALHDAELSSAPGSVAQVRECAAALQRLAKKLSIAMILVGHVTKEGLLAGPKVLEHLVDAVLT
FEGDRFASHRLLRAVKNRFGATNELGVFEMQGRGLSEVINPSKLFLSGTSAAGIATIVACEGTRALLVDVQALVSSTSYP
SPRRTATGVGTNRLHQILAVLEKHMGFPLSRYDCYLAVAGGLEVEEPASDLGIAAAIVSSFKDVSLPKGTVLIGELGLGG
QLRPVGQISQRLQEAERLGFNRAVVPRGSGLESIGFLKSIELIQVVNINEAIIMSLEVDK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=908869 SOI84_RS05475 WP_320673565.1 1071647..1073029(-) (radA) [Prochlorococcus sp. MIT 1341]
GTGGTCAGAACGACATCTTTTTTTGTTTGTCAGAGCTGTGGAGCTCAAACTAAGAAGTTCTTTGGACGTTGCTCAAGCTG
TGGGGACTGGAACTCCTTAATTGAGCAATCAGCTCAATCAATTGATGGAAGACTTCGCCGAAACAGTGTTGATTTTGATC
AGGAGCCAAGGAGTATTAAATCAATGCCAATGGCATCTTTGAAGGAAAATCCTTTATTAAGGTTAGGAAGTGGATATCAA
GAGTTTGACAGGGTTCTTGGAAGCGGCTTAGTCCCGGGATCACTTGTTTTGCTTGGAGGAGACCCTGGGATTGGAAAGAG
CACTTTGTTGTTGCAAAGTGCCACTGCCATGGCAATTAGTCGTTCTGTCTTATATGTCAGTGCGGAAGAATCTGCTCAAC
AGGTGAAACTCCGCTGGAATCGTCTTAAAGGAGCGGAGACAAATTTACATCTTTTGGCAGAAACTGATTTAGAGAATGTT
CTGAAGGAATTGGAATCTTTGAGACCTGAGGTGGCAATTGTGGACAGCATTCAGGCATTACATGATGCTGAATTATCTAG
TGCTCCAGGGTCAGTTGCGCAGGTAAGGGAATGCGCAGCTGCTTTGCAGCGTCTTGCCAAAAAGCTTTCTATAGCCATGA
TCTTGGTAGGACATGTCACCAAGGAAGGACTACTTGCAGGACCAAAAGTTCTAGAACACTTAGTCGATGCAGTTTTAACT
TTTGAAGGAGATAGATTTGCAAGTCATAGACTTTTGCGTGCTGTTAAAAACCGTTTTGGAGCAACAAATGAATTAGGCGT
TTTTGAAATGCAGGGCAGGGGCCTATCTGAGGTTATTAACCCCAGTAAGTTGTTTTTGAGTGGGACTTCAGCAGCTGGTA
TTGCGACGATCGTTGCATGTGAAGGGACTAGAGCACTCCTGGTTGATGTACAGGCTTTAGTTAGTTCAACAAGTTATCCC
AGCCCACGAAGAACTGCTACTGGGGTTGGGACTAACCGTCTACATCAAATTTTGGCTGTACTTGAAAAACATATGGGTTT
TCCTCTCTCTCGTTATGATTGTTATCTTGCTGTGGCAGGTGGTTTAGAAGTAGAGGAGCCTGCATCAGATCTTGGCATTG
CTGCAGCAATTGTTTCTAGCTTTAAGGATGTATCTTTGCCTAAGGGGACTGTTTTGATTGGGGAATTGGGCCTTGGAGGA
CAATTGAGACCGGTGGGACAAATTTCTCAGCGCCTTCAGGAAGCAGAAAGATTAGGTTTCAATCGTGCTGTTGTCCCTCG
AGGTAGTGGGTTGGAATCTATAGGGTTCTTAAAATCAATTGAGTTAATACAGGTAGTTAATATTAACGAGGCAATCATAA
TGTCATTAGAAGTTGATAAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(88-223)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.918

100

0.491
  radA Streptococcus pneumoniae Rx1

48.458

98.696

0.478
  radA Streptococcus pneumoniae D39

48.458

98.696

0.478
  radA Streptococcus pneumoniae R6

48.458

98.696

0.478
  radA Streptococcus pneumoniae TIGR4

48.458

98.696

0.478
  radA Streptococcus mitis NCTC 12261

48.458

98.696

0.478
  radA Streptococcus mitis SK321

48.238

98.696

0.476