Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   SOI74_RS09815 Genome accession   NZ_CP139287
Coordinates   2092472..2093272 (+) Length   266 a.a.
NCBI ID   WP_002114699.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2087472..2098272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS09790 (SOI74_09790) - 2088388..2089677 (+) 1290 WP_182918112.1 glycosyltransferase family 4 protein -
  SOI74_RS09795 (SOI74_09795) - 2089702..2090253 (+) 552 WP_017482038.1 phosphatase PAP2 family protein -
  SOI74_RS09800 (SOI74_09800) iscX 2090353..2090553 (+) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  SOI74_RS09805 (SOI74_09805) ndk 2090667..2091098 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  SOI74_RS09810 (SOI74_09810) rlmN 2091222..2092457 (+) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SOI74_RS09815 (SOI74_09815) pilF 2092472..2093272 (+) 801 WP_002114699.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  SOI74_RS09820 (SOI74_09820) - 2093263..2094054 (+) 792 WP_002114935.1 helix-turn-helix domain-containing protein -
  SOI74_RS09825 (SOI74_09825) ispG 2094076..2095191 (+) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  SOI74_RS09830 (SOI74_09830) hisS 2095188..2096480 (+) 1293 WP_032005186.1 histidine--tRNA ligase -
  SOI74_RS09835 (SOI74_09835) - 2096509..2097207 (+) 699 WP_017398816.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30114.38 Da        Isoelectric Point: 9.0417

>NTDB_id=908820 SOI74_RS09815 WP_002114699.1 2092472..2093272(+) (pilF) [Acinetobacter pittii strain 564U]
MSIPKLKTVLCMGIAVAFLVSGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=908820 SOI74_RS09815 WP_002114699.1 2092472..2093272(+) (pilF) [Acinetobacter pittii strain 564U]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGTAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCAGAACATTATTTTAAAAGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

93.985

100

0.94
  pilF Acinetobacter baylyi ADP1

76.154

97.744

0.744