Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI74_RS08630 Genome accession   NZ_CP139287
Coordinates   1839196..1839522 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain 564U     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834196..1844522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS08605 (SOI74_08605) hemC 1834811..1835728 (+) 918 WP_031945074.1 hydroxymethylbilane synthase -
  SOI74_RS08610 (SOI74_08610) hemD 1835732..1836499 (+) 768 WP_182917671.1 uroporphyrinogen-III synthase -
  SOI74_RS08615 (SOI74_08615) - 1836508..1837350 (+) 843 WP_044425062.1 hypothetical protein -
  SOI74_RS08620 (SOI74_08620) - 1837360..1838553 (+) 1194 WP_044425064.1 membrane protein -
  SOI74_RS08625 (SOI74_08625) - 1838561..1839001 (+) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI74_RS08630 (SOI74_08630) hns 1839196..1839522 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI74_RS08635 (SOI74_08635) gspN 1839857..1840600 (+) 744 WP_017481931.1 type II secretion system protein N -
  SOI74_RS08640 (SOI74_08640) - 1840600..1841436 (+) 837 WP_005079413.1 type II secretion system protein N -
  SOI74_RS08645 (SOI74_08645) gspD 1841478..1843748 (+) 2271 WP_017481932.1 type II secretion system secretin GspD -
  SOI74_RS08650 (SOI74_08650) - 1843789..1844415 (+) 627 WP_005065779.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908812 SOI74_RS08630 WP_000801427.1 1839196..1839522(+) (hns) [Acinetobacter pittii strain 564U]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908812 SOI74_RS08630 WP_000801427.1 1839196..1839522(+) (hns) [Acinetobacter pittii strain 564U]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1