Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SOI74_RS04585 Genome accession   NZ_CP139287
Coordinates   1001865..1002749 (-) Length   294 a.a.
NCBI ID   WP_017481657.1    Uniprot ID   A0AAN4S7G5
Organism   Acinetobacter pittii strain 564U     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996865..1007749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI74_RS04570 (SOI74_04570) miaB 998750..1000201 (+) 1452 WP_032006498.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  SOI74_RS04575 (SOI74_04575) phoL 1000239..1001327 (+) 1089 WP_002119513.1 PhoH family protein -
  SOI74_RS04580 (SOI74_04580) ybeY 1001337..1001813 (+) 477 WP_017481656.1 rRNA maturation RNase YbeY -
  SOI74_RS04585 (SOI74_04585) tonB2 1001865..1002749 (-) 885 WP_017481657.1 energy transducer TonB Machinery gene
  SOI74_RS04590 (SOI74_04590) - 1002982..1003653 (+) 672 WP_014207723.1 hypothetical protein -
  SOI74_RS04595 (SOI74_04595) - 1003812..1004525 (+) 714 WP_002119525.1 DUF3108 domain-containing protein -
  SOI74_RS04600 (SOI74_04600) xpt 1004598..1005173 (+) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  SOI74_RS04605 (SOI74_04605) wrbA 1005225..1005827 (-) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  SOI74_RS04610 (SOI74_04610) - 1006188..1007435 (+) 1248 WP_002119535.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33682.31 Da        Isoelectric Point: 7.6439

>NTDB_id=908788 SOI74_RS04585 WP_017481657.1 1001865..1002749(-) (tonB2) [Acinetobacter pittii strain 564U]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPLEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASTGNTELESLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKEASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=908788 SOI74_RS04585 WP_017481657.1 1001865..1002749(-) (tonB2) [Acinetobacter pittii strain 564U]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTTAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGTGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAACTGGAAATACTGAGTTAGA
AAGTTTGCAAAAGATACAGCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCCATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATAAAGACAGTAGACGGAATTCAAGCGAA
GAAAGAGGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGACTG
CTTGAAAGCTCAGGGCATTCAATACTAGATGAAGCAGCTAAGTCTTCAGTACGTCGCGGTGCACCATTTGGGCATTTTGA
TGCGAATATGAAAGATATTTCGGAGTTGCGTATTGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.415

100

0.874