Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   SOI81_RS16525 Genome accession   NZ_CP139286
Coordinates   3499219..3500373 (+) Length   384 a.a.
NCBI ID   WP_239976394.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3494219..3505373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS16505 (SOI81_16505) - 3495671..3495883 (-) 213 WP_016142488.1 hypothetical protein -
  SOI81_RS16510 (SOI81_16510) oprC 3495937..3498024 (-) 2088 WP_320541005.1 TonB-dependent copper receptor -
  SOI81_RS16515 (SOI81_16515) - 3498097..3498522 (-) 426 WP_239970356.1 DUF2946 family protein -
  SOI81_RS16520 (SOI81_16520) def 3498566..3499096 (-) 531 WP_016144059.1 peptide deformylase -
  SOI81_RS16525 (SOI81_16525) tsaP 3499219..3500373 (+) 1155 WP_239976394.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  SOI81_RS16530 (SOI81_16530) dprA 3500394..3501527 (+) 1134 WP_320541006.1 DNA-processing protein DprA Machinery gene
  SOI81_RS16535 (SOI81_16535) yrdC 3501578..3502147 (+) 570 WP_016142494.1 L-threonylcarbamoyladenylate synthase -
  SOI81_RS16540 (SOI81_16540) - 3502538..3503458 (-) 921 WP_239976396.1 DMT family transporter -
  SOI81_RS16545 (SOI81_16545) - 3503565..3504218 (-) 654 WP_080649527.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42651.53 Da        Isoelectric Point: 7.0719

>NTDB_id=908780 SOI81_RS16525 WP_239976394.1 3499219..3500373(+) (tsaP) [Acinetobacter pittii strain AbaK]
MKKVFDGMVQFHALGIKKHLLAFALFTGVAFGTVAEVYAASPNHNPPSLKSNAPHVYVVKRGDTLWDISGHFLSKPWRWP
EIWANNQHVKNPHWIYPGDRLLLCSLEGRPLVGKDEGDGCVGIIRRYTGQMTNLQPQVRVESINNNIPVIPLEHIKQWLE
HSTILPADAIEHTPYVVGTADQRVLAAKGQTIYARGQGLIDGQRYAIYREGEPYYFTDNKGKKHSLGIELQQVASGIAIS
SEKDITTLELTDSYDSEVRRGDRVMPEEEATLPTLFYPVDATQVSDAGKIIRVMGSIGTAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGETIRDPKTKESIKLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=908780 SOI81_RS16525 WP_239976394.1 3499219..3500373(+) (tsaP) [Acinetobacter pittii strain AbaK]
ATGAAAAAGGTTTTTGACGGCATGGTTCAATTTCATGCTTTGGGGATAAAAAAGCATTTACTTGCTTTCGCACTTTTTAC
AGGGGTTGCATTCGGTACGGTAGCAGAGGTTTATGCTGCTAGTCCAAACCATAATCCACCCTCTCTTAAAAGTAATGCAC
CACATGTCTACGTAGTAAAACGGGGAGATACGCTCTGGGATATTTCCGGTCACTTTCTGAGTAAACCTTGGCGCTGGCCT
GAAATTTGGGCAAATAATCAGCATGTCAAAAATCCGCATTGGATTTATCCTGGTGATCGACTACTGCTATGTAGTTTAGA
GGGCCGGCCGTTGGTTGGAAAAGATGAGGGAGACGGTTGTGTCGGCATTATTCGCCGTTACACAGGCCAAATGACAAATT
TACAACCTCAAGTTCGTGTAGAGTCAATTAACAATAACATCCCTGTTATTCCTCTTGAACATATCAAGCAGTGGTTAGAA
CACAGCACTATTCTGCCAGCTGACGCAATTGAACATACTCCTTATGTAGTAGGCACTGCCGATCAACGAGTACTTGCAGC
AAAAGGTCAAACTATTTATGCACGCGGACAAGGTTTGATTGATGGTCAACGTTATGCCATCTACCGTGAAGGTGAACCTT
ATTATTTCACAGATAATAAAGGCAAAAAGCATAGTCTAGGTATTGAGTTACAACAAGTTGCCTCGGGGATTGCTATCTCT
TCGGAAAAAGACATTACCACGCTTGAGTTAACTGACAGCTACGATTCTGAAGTACGTCGTGGTGATCGGGTTATGCCAGA
AGAAGAGGCTACATTGCCTACTTTATTTTATCCAGTGGACGCTACTCAAGTATCTGATGCCGGCAAAATCATTCGTGTAA
TGGGATCAATTGGCACTGCTGCCAAAAATAGTGTTGTGACTTTGGACCGCGGTACAACTCAAGGTGTTCAAGTAGGCCAA
GTTTTTGATATTACGCAGCAAGGTGAAACCATCCGAGACCCTAAAACCAAGGAATCAATAAAGTTACCTGGTCAACAAAT
TGGTAGCCTAATGGTTTTTAGAACCTTTGATCAGTTGAGTTATGCCTACGTATTAGAAAGTGATTTACCAATTAAAGTTG
GTTCAAGCATTCAGCCGCCTCGCTTTAATGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

89.062

100

0.891