Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI81_RS16080 Genome accession   NZ_CP139286
Coordinates   3409473..3409799 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain AbaK     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3404473..3414799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS16060 (SOI81_16060) - 3404576..3405202 (-) 627 WP_016142421.1 FHA domain-containing protein -
  SOI81_RS16065 (SOI81_16065) gspD 3405243..3407519 (-) 2277 WP_239975930.1 type II secretion system secretin GspD -
  SOI81_RS16070 (SOI81_16070) - 3407561..3408397 (-) 837 WP_239975929.1 type II secretion system protein N -
  SOI81_RS16075 (SOI81_16075) gspN 3408397..3409140 (-) 744 WP_239968156.1 type II secretion system protein N -
  SOI81_RS16080 (SOI81_16080) hns 3409473..3409799 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI81_RS16085 (SOI81_16085) - 3409994..3410434 (-) 441 WP_016142425.1 acyl-CoA thioesterase -
  SOI81_RS16090 (SOI81_16090) - 3410442..3411635 (-) 1194 WP_224993521.1 heme biosynthesis protein HemY -
  SOI81_RS16095 (SOI81_16095) - 3411645..3412487 (-) 843 WP_239975928.1 hypothetical protein -
  SOI81_RS16100 (SOI81_16100) hemD 3412496..3413263 (-) 768 WP_239975927.1 uroporphyrinogen-III synthase -
  SOI81_RS16105 (SOI81_16105) hemC 3413268..3414185 (-) 918 WP_239975926.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908775 SOI81_RS16080 WP_000801427.1 3409473..3409799(-) (hns) [Acinetobacter pittii strain AbaK]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908775 SOI81_RS16080 WP_000801427.1 3409473..3409799(-) (hns) [Acinetobacter pittii strain AbaK]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1