Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SOI81_RS15580 Genome accession   NZ_CP139286
Coordinates   3299436..3301664 (+) Length   742 a.a.
NCBI ID   WP_320540973.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3294436..3306664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS15555 (SOI81_15555) lnt 3294851..3296410 (+) 1560 WP_320540970.1 apolipoprotein N-acyltransferase -
  SOI81_RS15560 (SOI81_15560) csaA 3296412..3296750 (-) 339 WP_320540971.1 tRNA-binding protein -
  SOI81_RS15565 (SOI81_15565) - 3296896..3297240 (-) 345 WP_016142340.1 hypothetical protein -
  SOI81_RS15570 (SOI81_15570) gspG 3297507..3298058 (-) 552 WP_320139741.1 type II secretion system major pseudopilin GspG -
  SOI81_RS15575 (SOI81_15575) gspF 3298082..3299287 (-) 1206 WP_320540972.1 type II secretion system inner membrane protein GspF -
  SOI81_RS15580 (SOI81_15580) priA 3299436..3301664 (+) 2229 WP_320540973.1 primosomal protein N' Machinery gene
  SOI81_RS15585 (SOI81_15585) kefB 3301741..3303585 (+) 1845 WP_016142344.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  SOI81_RS15590 (SOI81_15590) hslO 3303750..3304625 (+) 876 WP_016142345.1 Hsp33 family molecular chaperone HslO -
  SOI81_RS15595 (SOI81_15595) - 3304763..3305374 (+) 612 WP_320540974.1 LysE family translocator -
  SOI81_RS15600 (SOI81_15600) cbpA 3305520..3306476 (+) 957 WP_206223834.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84027.87 Da        Isoelectric Point: 8.6622

>NTDB_id=908771 SOI81_RS15580 WP_320540973.1 3299436..3301664(+) (priA) [Acinetobacter pittii strain AbaK]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERARVGSRVAISFGRQNLIGIITEKVNPNEPFTGTFQLKAISELL
DDEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPEHEVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVNAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=908771 SOI81_RS15580 WP_320540973.1 3299436..3301664(+) (priA) [Acinetobacter pittii strain AbaK]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCCCGCGTAGGCTCACGCGTCGCTATTTCATTTGGACGCCAAAACCTGA
TTGGTATCATTACTGAAAAAGTGAACCCAAATGAACCATTTACAGGCACCTTTCAACTTAAAGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCCCAGTATTACCAATTTCCAATTGGTGA
GGTCATGCAAACCGCCCTACCTGCATTATTGCGTCAGGGCAAACCGATGGATGTTTTGTTTCATCTTTGGAAAATCACAC
CCTGCGATAATGTTGAAGCACTTCTTAAACGCTCGGTAAAGCAACAAGATGCTTATCAGATTTTAAAGTTACACCCTGCC
GGAACTACAGAAAATATTCTCAATTTAAGTGGTGTAGAAACGGCTACCCTTAAAGCGCTTCAAAAGAAAGGGCTAGTAGA
TTGCACACTTGAACCGCACGACTTTAGCCCCGCACCTGTTCAATTGGCACAAATGCCGCTCACACTCAATGAAGACCAAA
AGAAGGCAACCCAGCACGTCATAAACGCGCAACATCAGTACCAAGCCTTCTTGTTAGATGGTTTAACTGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTATTGGTTTTGGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCTCGGTTTAAGTCTCGTTTTAATTGTGATATTGCTCTCTTGCACTCTGGCTTAAATGACTCTA
AACGTTTACAAGCATGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACACGCTCTGCGATCTATACACCA
CTGCCACGTTTAGGTTTAATCATTTTAGATGAAGAACATGATCTGTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCACTTTATCGAGGTCACTTGCAAAACTGCCCTGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACTGCACTGCAACTTAACCAACGTGCAGGCCATGCGCTCTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGCATTAGCCAACCTTTAATCGAACAGATTAAAAATACCCTAGCCAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTGTGTGAAAGCTGTGGCTGGCAAGCAA
ATTGTCCACATTGCGATGCGCATTTTACTTTACATACTCAGCCTTATTCTTACTTACATTGCCACCACTGTGGTACCGTT
CATCGCTTGCCAGACCATTGCCCTGAATGTCAGCAAAAGAGTTTAAAAACCCTAGGAGCAGGGACAGCTAAGGTCGAAGA
ACACTTACAAGAATTATTTCCCGAACATGAAGTAATTCGAGTTGACCGTGACAGCACAAGTCGTGTGGGTAGCTGGCAAA
AAATCTATGACCGTATTCATCAAAACAAACCAACAATTTTGCTCGGCACTCAAATGTTGGCAAAAGGCCATCATTTTCCA
CACGTCACCTTAGTTGCTATTTTAGATATTGATGCGGGCTTACTGAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTGATTGTACAAGTCGCTGGACGTGCAGGCCGTGGCGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCCGATC
ACCCTTTACTAACGACTCTCATTGAAAAAGATTATCGGGCGGTTGCCAAACAGACGCTTGCAGAACGTAAAGTCGCATTG
CTGCCGCCTTATCGTTATGCCGTACTGATACGTGCAGAGTCCAAAGATCGCGACTACACCTTACATTTCTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGACATTGTTGATATTTGGGGACCAATTCCAGCCCCTATGGAGCGTAAAGCAG
GACGCTACCGTGCCCACATGGTAATTTTATCTGCTGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTAATGCACCGCGTCAGCATCAACTCAGACTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(208-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.17

100

0.972