Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   SOI81_RS14920 Genome accession   NZ_CP139286
Coordinates   3161171..3161971 (-) Length   266 a.a.
NCBI ID   WP_199936991.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156171..3166971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS14900 (SOI81_14900) - 3157236..3157934 (-) 699 WP_016142239.1 YfgM family protein -
  SOI81_RS14905 (SOI81_14905) hisS 3157963..3159255 (-) 1293 WP_016142240.1 histidine--tRNA ligase -
  SOI81_RS14910 (SOI81_14910) ispG 3159252..3160367 (-) 1116 WP_320540951.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  SOI81_RS14915 (SOI81_14915) - 3160389..3161180 (-) 792 WP_016142242.1 helix-turn-helix domain-containing protein -
  SOI81_RS14920 (SOI81_14920) pilF 3161171..3161971 (-) 801 WP_199936991.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  SOI81_RS14925 (SOI81_14925) rlmN 3161986..3163221 (-) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SOI81_RS14930 (SOI81_14930) ndk 3163345..3163776 (-) 432 WP_003654870.1 nucleoside-diphosphate kinase -
  SOI81_RS14935 (SOI81_14935) iscX 3163890..3164090 (-) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  SOI81_RS14940 (SOI81_14940) - 3164190..3164741 (-) 552 WP_316249979.1 phosphatase PAP2 family protein -
  SOI81_RS14945 (SOI81_14945) - 3164766..3166052 (-) 1287 WP_239974993.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30069.23 Da        Isoelectric Point: 8.7553

>NTDB_id=908767 SOI81_RS14920 WP_199936991.1 3161171..3161971(-) (pilF) [Acinetobacter pittii strain AbaK]
MSIPKLKTVLCMGIAVAFLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKTNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNEAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
VNAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVHTVGQKNQGARALWIGVRVARANADKMGTQALVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=908767 SOI81_RS14920 WP_199936991.1 3161171..3161971(-) (pilF) [Acinetobacter pittii strain AbaK]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAAAAAGCAGTAAAAGTGCGTACACAACTTGCTGCTGAACATATCCGTTCTGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGTGATGCAACAGCAAACATGATGATGGGGATTTTG
CTACAGCAAGAAGGTAGCAAAACCAACTTAGAAAAAGCAGAACATTATTTTAAACGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATACCAAATGGAGCGTTATAATGAGGCGATTGAGCAATTCCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GTGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCATACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAACGCAAGCGTTAGTAAACCAA
TTACGTGCCTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_8)

(39-68)

Tetratricopeptide repeat (TPR_16)

(149-205)

Tetratricopeptide repeat (TPR_16)

(89-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

92.481

100

0.925
  pilF Acinetobacter baylyi ADP1

74.615

97.744

0.729