Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI75_RS12320 Genome accession   NZ_CP139282
Coordinates   2530606..2530932 (-) Length   108 a.a.
NCBI ID   WP_002121134.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AE13     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2525606..2535932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI75_RS12300 (SOI75_12300) - 2525707..2526333 (-) 627 WP_002121153.1 FHA domain-containing protein -
  SOI75_RS12305 (SOI75_12305) gspD 2526374..2528650 (-) 2277 WP_002121232.1 type II secretion system secretin GspD -
  SOI75_RS12310 (SOI75_12310) - 2528692..2529528 (-) 837 WP_002121214.1 type II secretion system protein N -
  SOI75_RS12315 (SOI75_12315) gspN 2529528..2530271 (-) 744 WP_002121195.1 type II secretion system protein N -
  SOI75_RS12320 (SOI75_12320) hns 2530606..2530932 (-) 327 WP_002121134.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI75_RS12325 (SOI75_12325) - 2531127..2531567 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI75_RS12330 (SOI75_12330) - 2531575..2532768 (-) 1194 WP_002121267.1 hypothetical protein -
  SOI75_RS12335 (SOI75_12335) - 2532778..2533620 (-) 843 WP_002121187.1 hypothetical protein -
  SOI75_RS12340 (SOI75_12340) hemD 2533629..2534396 (-) 768 WP_002121177.1 uroporphyrinogen-III synthase -
  SOI75_RS12345 (SOI75_12345) hemC 2534400..2535317 (-) 918 WP_057082133.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=908708 SOI75_RS12320 WP_002121134.1 2530606..2530932(-) (hns) [Acinetobacter pittii strain AE13]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGTQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908708 SOI75_RS12320 WP_002121134.1 2530606..2530932(-) (hns) [Acinetobacter pittii strain AE13]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTACTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991