Detailed information NTG0908708

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRP05_RS05610
• Genome accession: NZ_CP158338
• Coordinates: 1153163..1154155 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 126096
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1148163..1159155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP05_RS05580 (ABRP05_05580)	ispD	1148224..1148934 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRP05_RS05585 (ABRP05_05585)	ispF	1148934..1149413 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRP05_RS05590 (ABRP05_05590)	truD	1149410..1150459 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRP05_RS05595 (ABRP05_05595)	surE	1150440..1151201 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRP05_RS05600 (ABRP05_05600)	pcm	1151195..1151821 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRP05_RS05605 (ABRP05_05605)	nlpD	1152006..1153100 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRP05_RS05610 (ABRP05_05610)	rpoS	1153163..1154155 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRP05_RS05615 (ABRP05_05615)	ygbN	1154249..1155613 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRP05_RS05620 (ABRP05_05620)	ygbM	1155702..1156478 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRP05_RS05625 (ABRP05_05625)	ygbL	1156483..1157121 (-)	639	WP_001278994.1	aldolase	-
ABRP05_RS05630 (ABRP05_05630)	otnK	1157118..1158380 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=908708 ABRP05_RS05610 WP_000081550.1 1153163..1154155(+) (rpoS) [Escherichia coli strain 126096]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=908708 ABRP05_RS05610 WP_000081550.1 1153163..1154155(+) (rpoS) [Escherichia coli strain 126096]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715