Detailed information NTG0908672

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: ABRP04_RS23210
• Genome accession: NZ_CP158333
• Coordinates: 4738825..4739850 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain 129130
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4733825..4744850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP04_RS23185 (ABRP04_23170)	metJ	4734262..4734579 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
ABRP04_RS23190 (ABRP04_23175)	yiiX	4734763..4735371 (+)	609	WP_106495437.1	YiiX family permuted papain-like enzyme	-
ABRP04_RS23195 (ABRP04_23180)	-	4735378..4736001 (+)	624	WP_000720774.1	TIGR02117 family protein	-
ABRP04_RS23200 (ABRP04_23185)	rpmE	4736056..4736268 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
ABRP04_RS23205 (ABRP04_23190)	priA	4736471..4738669 (+)	2199	WP_001300388.1	primosomal protein N'	Machinery gene
ABRP04_RS23210 (ABRP04_23195)	cytR	4738825..4739850 (+)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
ABRP04_RS23215 (ABRP04_23200)	ftsN	4739942..4740901 (+)	960	WP_000068828.1	cell division protein FtsN	-
ABRP04_RS23220 (ABRP04_23205)	hslV	4740994..4741524 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
ABRP04_RS23225 (ABRP04_23210)	hslU	4741534..4742865 (+)	1332	WP_001293341.1	HslU--HslV peptidase ATPase subunit	-
ABRP04_RS23230 (ABRP04_23215)	menA	4742932..4743858 (+)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
ABRP04_RS23235 (ABRP04_23220)	rraA	4743951..4744436 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
ABRP04_RS23240 (ABRP04_23225)	zapB	4744521..4744766 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=908672 ABRP04_RS23210 WP_000644904.1 4738825..4739850(+) (cytR) [Escherichia coli strain 129130]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=908672 ABRP04_RS23210 WP_000644904.1 4738825..4739850(+) (cytR) [Escherichia coli strain 129130]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628