Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SOI77_RS18080 Genome accession   NZ_CP139275
Coordinates   3808149..3809717 (+) Length   522 a.a.
NCBI ID   WP_057070654.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3803149..3814717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS18060 (SOI77_18060) hom 3803643..3804944 (+) 1302 WP_002121263.1 homoserine dehydrogenase -
  SOI77_RS18065 (SOI77_18065) thrC 3804999..3806138 (+) 1140 WP_002048893.1 threonine synthase -
  SOI77_RS18070 (SOI77_18070) pbpG 3806244..3807290 (-) 1047 WP_031946764.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  SOI77_RS18075 (SOI77_18075) gacA 3807503..3808138 (+) 636 WP_002121174.1 response regulator -
  SOI77_RS18080 (SOI77_18080) pilS 3808149..3809717 (+) 1569 WP_057070654.1 sensor histidine kinase Regulator
  SOI77_RS18085 (SOI77_18085) pilR 3809740..3811152 (+) 1413 WP_304595541.1 sigma-54-dependent transcriptional regulator Regulator
  SOI77_RS18090 (SOI77_18090) ctpA 3811156..3812340 (-) 1185 WP_014208171.1 S41 family peptidase -
  SOI77_RS18095 (SOI77_18095) gpmI 3812356..3813903 (-) 1548 WP_005065710.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59125.69 Da        Isoelectric Point: 6.2829

>NTDB_id=908636 SOI77_RS18080 WP_057070654.1 3808149..3809717(+) (pilS) [Acinetobacter pittii strain HCG138]
MQFPVNSSLSHTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPALYSYTLLGYSILSLLQLLCFKFIATQATRQ
LILFFVVDIICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHADLFEILKFDNLKEGDRFIFESRLSAYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDSEQQNTLRNMIGKQTKRIDSIVQDTLGLARSERTYPIQIELNDFIKTLLDEDLSDVK
HAIQLKFSDLSLKLLFDEKQLRQVLINLVRNALRHNAPDSPYVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=908636 SOI77_RS18080 WP_057070654.1 3808149..3809717(+) (pilS) [Acinetobacter pittii strain HCG138]
ATGCAATTTCCCGTAAACTCATCCTTGTCCCATACGATATTTCGTTTGGGCACGTGGTATGGTTTATATCGCCTTATTAT
TGCGGTTAGCCTGAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAACCCGCTTTATATTCTT
ACACACTGCTCGGCTATTCGATCTTAAGTCTTCTTCAACTTTTATGCTTTAAGTTTATTGCTACTCAGGCAACAAGGCAG
CTCATTTTATTTTTTGTAGTTGATATTATTTGTTTGAGTTTACTGACTTTTTCTGTGGGTGAACCAAATTTACAACTCAG
CTTACTCTATGTAATTGCAATCTTCACCTCGGCGATTTTACTCAGCGCAAGAATGTCGTTGCTCATTACATTACTTGCAG
TGATTGCGGTTATTTACCAACGCTTCGTTGGCAGTTTATTTGACTACAATAATTTAAATACGATTGGTAATAGCGCCTTA
TTGGCCTTCTTGTTTTTTGTAGTACACGGAATCGGACAAATTGCGGTCCAGCGCTTTAAATTACTTGAAGCGCTAACTTT
CCATCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATCTTGGAACAAATTGAAGAGGGCTATTTAGTTC
TAGATGAAAACTACGACATTGTTTTAAGTAATCCAGCCGCCTGCTCTCTTTTAGGAATTCCGCCTCAATTTGCCAGTGAA
AAATATCCCTTAGCAAAATGGCATGCTGACTTATTTGAAATTCTTAAGTTTGATAACCTAAAAGAAGGTGATCGATTTAT
TTTTGAATCTCGACTATCGGCTTATTCTATTAATATTAAAGTGCAACATCTTTTAGTGCCACAGCAAGCATTAACACTAC
TCATCTTACAAGATGCACAGCAGATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGACAACTCTCAGCAAGT
ATTGCCCATGAGATTCGTAATCCTCTTGCAGCCATCGTTCAAGCGAATGAATTACTCAAAGACAGTGATTCAGAACAGCA
AAATACTTTACGCAATATGATTGGCAAGCAAACGAAACGCATTGATAGTATTGTTCAAGACACCTTAGGACTCGCCCGCA
GTGAAAGAACGTATCCCATCCAGATTGAATTAAACGACTTTATAAAAACATTATTAGATGAAGATTTATCTGATGTTAAA
CATGCGATCCAGCTTAAATTTTCTGATTTATCCTTAAAGCTATTGTTTGATGAAAAGCAACTCAGACAAGTGCTCATTAA
CCTTGTTAGGAATGCTCTACGCCACAATGCACCTGATTCGCCCTATGTTCTGATCAATATCCACTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

94.636

100

0.946