Detailed information NTG0908622

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ABRP04_RS05615
• Genome accession: NZ_CP158333
• Coordinates: 1153150..1154142 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 129130
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1148150..1159142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP04_RS05585 (ABRP04_05585)	ispD	1148211..1148921 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ABRP04_RS05590 (ABRP04_05590)	ispF	1148921..1149400 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ABRP04_RS05595 (ABRP04_05595)	truD	1149397..1150446 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ABRP04_RS05600 (ABRP04_05600)	surE	1150427..1151188 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ABRP04_RS05605 (ABRP04_05605)	pcm	1151182..1151808 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ABRP04_RS05610 (ABRP04_05610)	nlpD	1151993..1153087 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ABRP04_RS05615 (ABRP04_05615)	rpoS	1153150..1154142 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ABRP04_RS05620 (ABRP04_05620)	ygbN	1154236..1155600 (-)	1365	WP_000104441.1	GntP family transporter	-
ABRP04_RS05625 (ABRP04_05625)	ygbM	1155689..1156465 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ABRP04_RS05630 (ABRP04_05630)	ygbL	1156470..1157108 (-)	639	WP_001278994.1	aldolase	-
ABRP04_RS05635 (ABRP04_05635)	otnK	1157105..1158367 (-)	1263	WP_072649794.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=908622 ABRP04_RS05615 WP_000081550.1 1153150..1154142(+) (rpoS) [Escherichia coli strain 129130]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=908622 ABRP04_RS05615 WP_000081550.1 1153150..1154142(+) (rpoS) [Escherichia coli strain 129130]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715