Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK09_RS05730 Genome accession   NZ_AP027844
Coordinates   1185113..1185628 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 2017.18.02CC     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180113..1190628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK09_RS05685 (VEE62_11060) csrA 1180565..1180750 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK09_RS05715 (VEE62_11070) yqaB 1182343..1182909 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK09_RS05720 (VEE62_11080) yqaA 1182906..1183334 (+) 429 WP_001287457.1 YqaA family protein -
  AABK09_RS05725 (VEE62_11090) gshA 1183407..1184963 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AABK09_RS05730 (VEE62_11100) luxS 1185113..1185628 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK09_RS05735 (VEE62_11110) emrB 1185692..1187230 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK09_RS05740 (VEE62_11120) emrA 1187247..1188419 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK09_RS05745 (VEE62_11130) emrR 1188546..1189076 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK09_RS05750 (VEE62_11140) ygaH 1189167..1189502 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK09_RS05755 (VEE62_11150) ygaZ 1189492..1190229 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=90862 AABK09_RS05730 WP_001130211.1 1185113..1185628(+) (luxS) [Escherichia coli strain 2017.18.02CC]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=90862 AABK09_RS05730 WP_001130211.1 1185113..1185628(+) (luxS) [Escherichia coli strain 2017.18.02CC]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment