Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   SOI77_RS02420 Genome accession   NZ_CP139275
Coordinates   494767..495651 (+) Length   294 a.a.
NCBI ID   WP_320562030.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG138     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489767..500651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI77_RS02395 (SOI77_02395) - 490081..491328 (-) 1248 WP_002119535.1 YihY family inner membrane protein -
  SOI77_RS02400 (SOI77_02400) wrbA 491689..492291 (+) 603 WP_005078299.1 NAD(P)H:quinone oxidoreductase -
  SOI77_RS02405 (SOI77_02405) xpt 492343..492918 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  SOI77_RS02410 (SOI77_02410) - 492991..493704 (-) 714 WP_104079822.1 DUF3108 domain-containing protein -
  SOI77_RS02415 (SOI77_02415) - 493863..494534 (-) 672 WP_002119526.1 hypothetical protein -
  SOI77_RS02420 (SOI77_02420) tonB2 494767..495651 (+) 885 WP_320562030.1 TonB family protein Machinery gene
  SOI77_RS02425 (SOI77_02425) ybeY 495703..496179 (-) 477 WP_078225052.1 rRNA maturation RNase YbeY -
  SOI77_RS02430 (SOI77_02430) phoL 496189..497277 (-) 1089 WP_002119513.1 PhoH family protein -
  SOI77_RS02435 (SOI77_02435) miaB 497315..498766 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33640.23 Da        Isoelectric Point: 7.6438

>NTDB_id=908611 SOI77_RS02420 WP_320562030.1 494767..495651(+) (tonB2) [Acinetobacter pittii strain HCG138]
MLNKRSLSIEPFHHWWQDRVFIAATILAILLHIFVLLIHFAMPSPSEQSTKEIAISIRPSNEPVHQADFLAQADQQGAGA
FREAHRTSSDTPNPMLNDASIGNTELESLQKIHQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAIYLDKFREKVELYGNRYYPEEAKQQQLRGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVN

Nucleotide


Download         Length: 885 bp        

>NTDB_id=908611 SOI77_RS02420 WP_320562030.1 494767..495651(+) (tonB2) [Acinetobacter pittii strain HCG138]
ATGTTGAACAAAAGAAGTTTATCCATAGAGCCTTTTCATCATTGGTGGCAAGACCGAGTCTTTATTGCCGCAACAATATT
GGCAATCTTACTGCATATTTTTGTATTGCTCATTCACTTTGCCATGCCTAGCCCCTCAGAGCAATCTACTAAAGAAATTG
CAATTTCAATTCGGCCAAGCAATGAGCCAGTTCACCAAGCAGATTTTTTAGCGCAAGCAGATCAGCAAGGCGCGGGCGCA
TTTCGTGAAGCTCATCGGACTTCTAGTGATACTCCAAATCCGATGCTCAATGATGCTTCAATCGGAAATACTGAGTTAGA
AAGTTTGCAAAAGATTCATCAACAAAGAGAGCTTAAATTTGAAGAAAAAGTTTTAATGACGGTTTTGAGTTGGCAGAAAC
AAGCGGATGCAAGCCAAAGAAAAAAAGAACTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCTATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGCCAACAAGATTTCAGCCGTCAGCAAAAAATTAAAACAGTAGATGGTATTCAAGCAAA
GAAAGATGCTTCAGCTATTTATTTAGATAAATTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTACCCTGAAGAAG
CCAAACAGCAACAGCTAAGAGGTGAAGTGCGTTTAATGGTTATTTTGAATGCTCAAGGCGGAATTCGTGCAATCCGTCTG
CTTGAAAGTTCAGGGCATTCAATACTAGACGAAGCAGCGAAGTCTTCAGTACGCCGCGGCGCACCATTTGGGCATTTTGA
TGCCAATATGAAAGATATTTCAGAGTTGCGTATAGTACGTACTTGGCGTTTTGACCCAGCTGAAGCTGAATTTGAGGTTA
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

87.075

100

0.871