Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   SOI80_RS17835 Genome accession   NZ_CP139270
Coordinates   3672692..3673018 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain HCG62     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3667692..3678018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS17815 (SOI80_17820) - 3667799..3668425 (-) 627 WP_005065779.1 FHA domain-containing protein -
  SOI80_RS17820 (SOI80_17825) gspD 3668466..3670736 (-) 2271 WP_017481932.1 type II secretion system secretin GspD -
  SOI80_RS17825 (SOI80_17830) - 3670778..3671614 (-) 837 WP_320561196.1 type II secretion system protein N -
  SOI80_RS17830 (SOI80_17835) gspN 3671614..3672357 (-) 744 WP_320561197.1 type II secretion system protein N -
  SOI80_RS17835 (SOI80_17840) hns 3672692..3673018 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  SOI80_RS17840 (SOI80_17845) - 3673213..3673653 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  SOI80_RS17845 (SOI80_17850) - 3673661..3674854 (-) 1194 WP_044425064.1 membrane protein -
  SOI80_RS17850 (SOI80_17855) - 3674864..3675706 (-) 843 WP_044425062.1 hypothetical protein -
  SOI80_RS17855 (SOI80_17860) hemD 3675715..3676482 (-) 768 WP_320561198.1 uroporphyrinogen-III synthase -
  SOI80_RS17860 (SOI80_17865) hemC 3676486..3677403 (-) 918 WP_031945074.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=908586 SOI80_RS17835 WP_000801427.1 3672692..3673018(-) (hns) [Acinetobacter pittii strain HCG62]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=908586 SOI80_RS17835 WP_000801427.1 3672692..3673018(-) (hns) [Acinetobacter pittii strain HCG62]
ATGAAGCCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1