Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   SOI80_RS17325 Genome accession   NZ_CP139270
Coordinates   3561153..3563381 (+) Length   742 a.a.
NCBI ID   WP_032042297.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3556153..3568381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS17300 (SOI80_17305) lnt 3556535..3558094 (+) 1560 WP_005079282.1 apolipoprotein N-acyltransferase -
  SOI80_RS17305 (SOI80_17310) csaA 3558096..3558434 (-) 339 WP_005079284.1 tRNA-binding protein -
  SOI80_RS17310 (SOI80_17315) - 3558580..3558924 (-) 345 WP_005079286.1 hypothetical protein -
  SOI80_RS17315 (SOI80_17320) gspG 3559191..3559775 (-) 585 WP_005079288.1 type II secretion system major pseudopilin GspG -
  SOI80_RS17320 (SOI80_17325) gspF 3559799..3561004 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  SOI80_RS17325 (SOI80_17330) priA 3561153..3563381 (+) 2229 WP_032042297.1 primosomal protein N' Machinery gene
  SOI80_RS17330 (SOI80_17335) kefB 3563458..3565302 (+) 1845 WP_005079290.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  SOI80_RS17335 (SOI80_17340) hslO 3565466..3566341 (+) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  SOI80_RS17340 (SOI80_17345) - 3566480..3567091 (+) 612 WP_002115157.1 LysE family translocator -
  SOI80_RS17345 (SOI80_17350) cbpA 3567237..3568193 (+) 957 WP_032042299.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84039.74 Da        Isoelectric Point: 8.3572

>NTDB_id=908582 SOI80_RS17325 WP_032042297.1 3561153..3563381(+) (priA) [Acinetobacter pittii strain HCG62]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISDLL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVELAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEHLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHASRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=908582 SOI80_RS17325 WP_032042297.1 3561153..3563381(+) (priA) [Acinetobacter pittii strain HCG62]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGGCGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GATGAAGAGCCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCAGCTCAGTATTACCAATTTCCAATTGGCGA
GGTCATGCAAACCGCCCTACCTGCATTATTGCGTCAAGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATCACGC
CATGTGATAATGTTGAAGCACTTCTTAAACGCTCTGTTAAGCAACAAGACGCGTATCAAATTTTAAAGTTACATCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGACTTTAGCCCATCGCCTGTTGAATTGGCACAAATGCCGCTCACGCTAAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCGTAAACGCGCAGCATCAATACCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTATTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTGCACTCAGGCTTAAATGACTCCA
AACGCTTACAAGCATGGCAACAGGCTCAGACTGGCAAAGCATCTATTATTTTAGGAACCCGCTCAGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTCTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGTTTCCGTTACCATGC
ACGTGATGTCGCACTGTACCGAGGTCACTTACAAAACTGTCCAGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAACATGGAATTAGCCAACCTCTTATTGAGCAAATCAAGCATACGTTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGGTGGCAAGCAA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTACCCGATCACTGCCCTGAATGTCAGCAAAAAAGCCTAAAAACCCTAGGTGCTGGAACAGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGTACTCAAATGTTGGCAAAAGGTCACCATTTCCCA
CACGTGACTTTGGTTGCTATTTTAGATATTGATGCTGGGTTACTCAGCGTAGACATTCGTGCGCCAGAACGTACTGCACA
GTTAATTGTACAAGTCGCGGGTCGTGCAGGCCGTGGTGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCAGATC
ACCCTTTACTGACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCCAAACAAACTCTTGCGGAACGTAAAGTCGCATTA
CTGCCGCCTTACCGTTATGCAGTACTGATACGTGCGGAATCCAAAGATCGTGACTATACCTTGCAATTTTTAAATGAAGC
GGCAGAACATTTACGCCAAATTGCGGGTGAAATTGTTGATATTTGGGGGCCAATTCCAGCCCCTATGGAGCGTAAAGCTG
GACGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTCCATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCATCAAGGCAGCATCAACTTCGACTCTCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.574

100

0.976