Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   AABK09_RS03940 Genome accession   NZ_AP027844
Coordinates   821138..822364 (-) Length   408 a.a.
NCBI ID   WP_001598622.1    Uniprot ID   -
Organism   Escherichia coli strain 2017.18.02CC     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 816138..827364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK09_RS03925 (VEE62_07650) - 818443..819534 (-) 1092 WP_001596182.1 Stealth CR1 domain-containing protein -
  AABK09_RS03930 (VEE62_07660) - 819538..820209 (-) 672 WP_000590810.1 ABC transporter ATP-binding protein -
  AABK09_RS03935 (VEE62_07670) - 820206..820982 (-) 777 WP_001513438.1 ABC transporter permease -
  AABK09_RS03940 (VEE62_07680) kpsS 821138..822364 (-) 1227 WP_001598622.1 capsular biosynthesis protein Regulator
  AABK09_RS03945 (VEE62_07690) - 822399..824426 (-) 2028 WP_001598621.1 capsular polysaccharide biosynthesis protein -
  AABK09_RS03950 (VEE62_07700) kdsB 824423..825163 (-) 741 WP_001596179.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AABK09_RS03955 (VEE62_07710) - 825173..826849 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 48522.90 Da        Isoelectric Point: 10.0933

>NTDB_id=90854 AABK09_RS03940 WP_001598622.1 821138..822364(-) (kpsS) [Escherichia coli strain 2017.18.02CC]
MQGNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRNRQYQAYNQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKQWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWNEARCWVRAYWRKQLYRVTQRNVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKKYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNSLYDIVDLTYQGTLDDFWLTKFKPDIKLFKKFKEYLLFKTQINHVFYGNEKINKSINI
NSFIGSHK

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=90854 AABK09_RS03940 WP_001598622.1 821138..822364(-) (kpsS) [Escherichia coli strain 2017.18.02CC]
ATGCAAGGTAATGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTTTTCAA
TGACGTTGCCGAATGGTTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGTGTTCAACGGCGGTGATCGTTTTTACTGCC
GCAATCGACAATACCAGGCTTACAACCAAACGCCGAAAGAATTTCCCGGTTGGTTGCGAGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTACACAAAGAAGCAAAACAGTGGGCTAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCAC
TACCGCGCGATCCTGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGAATGAGGCACGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAGGGTAACACAGCGTA
ATGTATTGCCGAGGTTAATGAATGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
GAGTTATTTAGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTAAGTAAGA
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAGCCACTGAAAGTTATGGGAAATTCTCTTTATGATAT
CGTTGACTTAACATACCAAGGAACATTAGATGACTTCTGGTTAACAAAATTCAAACCAGACATAAAGTTGTTTAAAAAAT
TTAAAGAGTATTTATTGTTTAAAACACAAATAAATCATGTTTTTTATGGAAACGAGAAAATAAATAAGAGCATAAATATC
AATAGTTTTATTGGTTCACACAAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.744

95.588

0.38